Team:LMU-Munich/ProSearch/Schedule
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- | In order to understand gene regulation of apoptosis regulated genes | + | In order to understand gene regulation of apoptosis regulated genes the [http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=searchPromForm Transcriptional Regulatory Element Database (TRED)] was used to extract known promoters and the [http://string-db.org/ STRING] database for known and predicted protein-protein interactions. The lists of all known human transcription factors was downloaded from [http://www.introni.it/transcription_factors.html here] and [http://www.nature.com/nrg/journal/v10/n4/extref/nrg2538-s3.txt here]. |
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Revision as of 10:36, 26 September 2010
The cell line used in this project is the human embryonic kidney cell line 293T .
The NCBI GEO and ArrayExpress databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained:
In order to understand gene regulation of apoptosis regulated genes the Transcriptional Regulatory Element Database (TRED) was used to extract known promoters and the STRING database for known and predicted protein-protein interactions. The lists of all known human transcription factors was downloaded from here and here.
Cell Line
Databases Search
Environmental Condition (EV)
#genes selectively expressed in this EV
Reference
Conduritol B Epoxide treatment
57
[1]
Gammaherpesvirus
103
[2]
HIV integration
1
[3]
HLTV-1 p30
2291
[4]
Hypoxia
2
[5]
RCAS-beta-cateinS37A
55
[6]
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo