Team:INSA-Lyon/Project/References

From 2010.igem.org

Revision as of 17:14, 26 October 2010 by AX (Talk | contribs)




References

JabRef References output
article (Adhya1989)
Adhya, S.
Multipartite genetic control elements: communication by DNA loop.
Annu Rev Genet,
Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892., 1989, 23, 227-250
article (Aguilera2008)
Aguilera, L.; Campos, E.; Giménez, R.; Badía, J.; Aguilar, J. & Baldoma, L.
Dual role of LldR in regulation of the lldPRD operon, involved in L-lactate metabolism in Escherichia coli.
J Bacteriol,
Departament de Bioquímica i Biología Molecular, Facultat de Farmacia, Universitat de Barcelona, Av. Diagonal 643, E-08028 Barcelona, Spain., 2008, 190, 2997-3005
article (Alberti1993)
Alberti, S.; Oehler, S.; von Wilcken-Bergmann, B. & Müller-Hill, B.
Genetic analysis of the leucine heptad repeats of Lac repressor: evidence for a 4-helical bundle.
EMBO J,
Institut für Genetik, Universität zu Köln, FRG., 1993, 12, 3227-3236
article (Allen2006)
Allen, T. E.; Price, N. D.; Joyce, A. R. & Palsson, B. Ø.
Long-range periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization.
PLoS Comput Biol,
Department of Bioengineering, University of California San Diego, La Jolla, California, USA., 2006, 2, e2
article (Alon2007)
Alon, U.
Network motifs: theory and experimental approaches.
Nat Rev Genet,
2007, 8, 450-461
book (Alon2006)
Alon, U.
An Introduction to Systems Biology
Chapman & Hall/CRC, 2006
article (Altan-Bonnet2003)
Altan-Bonnet, G.; Libchaber, A. & Krichevsky, O.
Bubble dynamics in double-stranded DNA.
Phys Rev Lett,
Center for Studies in Physics and Biology, The Rockefeller University, New York, New York 10021, USA., 2003, 90, 138101
article (Amouyal2005)
Amouyal, M.
Gene regulation at-a-distance in E. coli: new insights.
C R Biol,
2005, 328, 1-9
article (Amouyal1989)
Amouyal, M.; Mortensen, L.; Buc, H. & Hammer, K.
Single and double loop formation when deoR repressor binds to its natural operator sites.
Cell,
Unité de Physicochimie des Macromolécules Biologiques, URA1149 du CNRS, Institut Pasteur, Paris, France., 1989, 58, 545-551
article (Ansel2008)
Ansel, J.; Bottin, H.; Rodriguez-Beltran, C.; Damon, C.; Nagarajan, M.; Fehrmann, S.; François, J. & Yvert, G.
Cell-to-cell stochastic variation in gene expression is a complex genetic trait.
PLoS Genet,
Université de Lyon, Lyon, France., 2008, 4, e1000049
article (Atkinson2003)
Atkinson, M. R.; Savageau, M. A.; Myers, J. T. & Ninfa, A. J.
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
Cell,
2003, 113, 597-607
article (Atlung1997)
Atlung, T. & Ingmer, H.
H-NS: a modulator of environmentally regulated gene expression.
Mol Microbiol,
Department of Chemistry and Life Sciences, Roskilde University, Denmark. atlung@virgil.ruc.dk, 1997, 24, 7-17
article (Bachellier1999)
Bachellier, S.; Clément, J. M. & Hofnung, M.
Short palindromic repetitive DNA elements in enterobacteria: a survey.
Res Microbiol,
Programmation moléculaire et toxicologie génétique, département des biotechnologies, CNRS URA 1444, Institut Pasteur, Paris, France. bachelli@pasteur.fr, 1999, 150, 627-639
mastersthesis (Baglio2008)
Baglio, J.
Dynamique du biopolymére ADN en suivi de particule unique :simulations et expériences dans le cadre du s mécanisme de transposition.
ENS, 2008
article (Bahloul2001)
Bahloul, A.; Boubrik, F. & Rouviere-Yaniv, J.
Roles of Escherichia coli histone-like protein HU in DNA replication: HU-beta suppresses the thermosensitivity of dnaA46ts.
Biochimie,
Laboratoire de Physiologie Bactérienne, CNRS, UPR 9073, Institut de Biologie Physico-Chimique, 13, rue Pierre-et-Marie-Curie, 75005, Paris, France., 2001, 83, 219-229
article (Barkai2000)
Barkai, N. & Leibler, S.
Circadian clocks limited by noise.
Nature,
2000, 403, 267-268
article (Becskei2000)
Becskei, A. & Serrano, L.
Engineering stability in gene networks by autoregulation.
Nature,
2000, 405, 590-593
article (Behar2007)
Behar, M.; Dohlman, H. G. & Elston, T. C.
Kinetic insulation as an effective mechanism for achieving pathway specificity in intracellular signaling networks.
Proc Natl Acad Sci U S A,
2007, 104, 16146-16151
article (Berg1981)
Berg, O. G.; Winter, R. B. & von Hippel, P. H.
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.
Biochemistry,
1981, 20, 6929-6948
article (Bergstrom1998)
Bergstrom, L. C.; Qin, L.; Harlocker, S. L.; Egger, L. A. & Inouye, M.
Hierarchical and co-operative binding of OmpR to a fusion construct containing the ompC and ompF upstream regulatory sequences of Escherichia coli.
Genes Cells,
Department of Biochemistry, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA. inouye@rwja.umdnj.edu, 1998, 3, 777-788
article (Bhalla1999)
Bhalla, U. S. & Iyengar, R.
Emergent properties of networks of biological signaling pathways.
Science,
1999, 283, 381-387
article (Blanco1986)
Blanco, C.; Ritzenthaler, P. & Mata-Gilsinger, M.
Negative dominant mutations of the uidR gene in Escherichia coli: genetic proof for a cooperative regulation of uidA expression.
Genetics,
1986, 112, 173-182
article (Blot2002)
Blot, N.; Berrier, C.; Hugouvieux-Cotte-Pattat, N.; Ghazi, A. & Condemine, G.
The oligogalacturonate-specific porin KdgM of Erwinia chrysanthemi belongs to a new porin family.
J Biol Chem,
Unité de Microbiologie et Génétique, Composante INSA, UMR-CNRS 5122, INSA, Bâtiment Louis Pasteur, 11 Avenue Jean Capelle, 69621 Villeurbanne Cedex, France., 2002, 277, 7936-7944
article (Bondarenko2003)
Bondarenko, V. A.; Liu, Y. V.; Jiang, Y. I. & Studitsky, V. M.
Communication over a large distance: enhancers and insulators.
Biochem Cell Biol,
Department of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA., 2003, 81, 241-251
article (Brunetti2001)
Brunetti, R.; Prosseda, G.; Beghetto, E.; Colonna, B. & Micheli, G.
The looped domain organization of the nucleoid in histone-like protein defective Escherichia coli strains.
Biochimie,
Centro Acidi Nucleici C.N.R., Università La Sapienza, P. le A. Moro 5, Rome 00185, Italy., 2001, 83, 873-882
article (Buchler2003)
Buchler, N. E.; Gerland, U. & Hwa, T.
On schemes of combinatorial transcription logic.
Proc Natl Acad Sci U S A,
Department of Physics and Center for Theoretical Biological Physics, University of California at San Diego, La Jolla, CA 92093-0319, USA., 2003, 100, 5136-5141
article (Bundschuh2003)
Bundschuh, R.; Hayot, F. & Jayaprakash, C.
The role of dimerization in noise reduction of simple genetic networks.
J Theor Biol,
2003, 220, 261-269
article (Carew1972)
Carew, T. J.; Pinsker, H. M. & Kandel, E. R.
Long-Term Habituation of a Defensive Withdrawal Reflex in Aplysia.
Science,
1972, 175, 451-454
article (Carlo2006)
Carlo, S. D.; Chen, B.; Hoover, T. R.; Kondrashkina, E.; Nogales, E. & Nixon, B. T.
The structural basis for regulated assembly and function of the transcriptional activator NtrC.
Genes Dev,
Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California 94720, USA., 2006, 20, 1485-1495
article (Carpentier2005)
Carpentier, A.; Torrésani, B.; Grossmann, A. & Hénaut, A.
Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data.
BMC Genomics,
Laboratoire Génome et Informatique, CNRS UMR 8116, Tour Evry2, 523 Place des Terrasses, 91034 Evry Cedex, France. carpentier@genopole.cnrs.fr, 2005, 6, 84
article (Castillo1998)
Castillo, A.; Nasser, W.; Condemine, G. & Reverchon, S.
The PecT repressor interacts with regulatory regions of pectate lyase genes in Erwinia chrysanthemi.
Biochim Biophys Acta,
1998, 1442, 148-160
article (Charlier1992)
Charlier, D.; Roovers, M.; Vliet, F. V.; Boyen, A.; Cunin, R.; Nakamura, Y.; Glansdorff, N. & Piérard, A.
Arginine regulon of Escherichia coli K-12. A study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression.
J Mol Biol,
Research Institute of the CERIA-COOVI, Brussels, Belgium., 1992, 226, 367-386
article (Chen2010)
Chen, Y.; Milstein, J. N. & Meiners, J.
Femtonewton entropic forces can control the formation of protein-mediated DNA loops.
Phys Rev Lett,
Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA., 2010, 104, 048301
article (Cherry2000)
Cherry, J. L. & Adler, F. R.
How to make a biological switch.
J Theor Biol,
Department of Biology, University of Utah, Salt Lake City, UT, 84112, USA. cherry@biology.utah.edu, 2000, 203, 117-133
article (Chiam2007)
Chiam, K. & Rajagopal, G.
Oscillations in intracellular signaling cascades.
Phys Rev E Stat Nonlin Soft Matter Phys,
2007, 75, 061901
article (Ciliberti2007)
Ciliberti, S.; Martin, O. C. & Wagner, A.
Innovation and robustness in complex regulatory gene networks.
Proc Natl Acad Sci U S A,
2007, 104, 13591-13596
article (Ciliberto2005)
Ciliberto, A.; Novak, B. & Tyson, J. J.
Steady states and oscillations in the p53/Mdm2 network.
Cell Cycle,
2005, 4, 488-493
article (Condemine1992)
Condemine, G.; Dorel, C.; Hugouvieux-Cotte-Pattat, N. & Robert-Baudouy, J.
Some of the out genes involved in the secretion of pectate lyases in Erwinia chrysanthemi are regulated by kdgR.
Mol Microbiol,
Laboratoire de Génetique Moléculaire des Microorganismes, URA CNRS 1486, INSA Bâtiment 406, Villeurbanne, France., 1992, 6, 3199-3211
article (Cook2002)
Cook, P. R.
Predicting three-dimensional genome structure from transcriptional activity.
Nat Genet,
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK. peter.cook@path.ox.ac.uk, 2002, 32, 347-352
article (Cox2006)
Cox, C. D.; McCollum, J. M.; Austin, D. W.; Allen, M. S.; Dar, R. D. & Simpson, M. L.
Frequency domain analysis of noise in simple gene circuits.
Chaos,
2006, 16, 026102
book (Frederic2002)
Dardel, F. & Képès, F.
de l'Ecole Polytechnique, L. E. (ed.)
Bioinformatique Génomique et post-génomique
2002
article (Dekker2008)
Dekker, J.
Gene regulation in the third dimension.
Science,
2008, 319, 1793-1794
article (Dekker2002)
Dekker, J.; Rippe, K.; Dekker, M. & Kleckner, N.
Capturing chromosome conformation.
Science,
Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA. jdekker@fas.harvard.edu, 2002, 295, 1306-1311
article (Delord2007)
Delord, B.; Berry, H.; Guigon, E. & Genet, S.
A new principle for information storage in an enzymatic pathway model.
PLoS Comput Biol,
2007, 3, e124
article (Dolmetsch1998)
Dolmetsch, R. E.; Xu, K. & Lewis, R. S.
Calcium oscillations increase the efficiency and specificity of gene expression.
Nature,
1998, 392, 933-936
article (Dostie2007)
Dostie, J.; Zhan, Y. & Dekker, J.
Chromosome conformation capture carbon copy technology.
Curr Protoc Mol Biol,
2007, Chapter 21, Unit 21.14
article (Dunlap2004)
Dunlap, J. C. & Loros, J. J.
The neurospora circadian system.
J Biol Rhythms,
2004, 19, 414-424
article (Dunn1984)
Dunn, T. M.; Hahn, S.; Ogden, S. & Schleif, R. F.
An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression.
Proc Natl Acad Sci U S A,
1984, 81, 5017-5020
article (Dupont1992)
Dupont, G. & Goldbeter, A.
Protein phosphorylation driven by intracellular calcium oscillations: a kinetic analysis.
Biophys Chem,
1992, 42, 257-270
article (Dupont2003)
Dupont, G.; Houart, G. & Koninck, P. D.
Sensitivity of CaM kinase II to the frequency of Ca2+ oscillations: a simple model.
Cell Calcium,
2003, 34, 485-497
article (Dworkin1998)
Dworkin, J.; Ninfa, A. J. & Model, P.
A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding protein.
Genes Dev,
Laboratory of Genetics, The Rockefeller University, New York, New York 10021, USA. dworkin@biosun.harvard.edu, 1998, 12, 894-900
article (Elowitz2000)
Elowitz, M. & Leibler, S.
A synthetic oscillatory network of transcriptionnal regulators.
Nature,
2000, 403, 335-338
article (Espeli1997)
Espéli, O. & Boccard, F.
In vivo cleavage of Escherichia coli BIME-2 repeats by DNA gyrase: genetic characterization of the target and identification of the cut site.
Mol Microbiol,
Laboratoire de Chimie Bactérienne, UPR 9043, Institut de Biologie Structurale et Microbiologie du CNRS, Marseille, France., 1997, 26, 767-777
article (Espeli2001)
Espéli, O.; Moulin, L. & Boccard, F.
Transcription attenuation associated with bacterial repetitive extragenic BIME elements.
J Mol Biol,
Centre de Génétique Moléculaire du CNRS, Centre National de la Recherche Scientifique, Gif-sur-Yvette Cedex, F-91198, France., 2001, 314, 375-386
phdthesis (Francois2005)
François, P.
Réseaux génétiques conception, modélisation et dynamique
Ecole Normale Supérieure, 2005
article (Francois2005a)
François, P. & Hakim, V.
Core genetic module: the mixed feedback loop.
Phys Rev E Stat Nonlin Soft Matter Phys,
2005, 72, 031908
article (Francois2004)
François, P. & Hakim, V.
Design of genetic networks with specified functions by evolution in silico.
Proc Natl Acad Sci U S A,
Laboratoire de Physique Statistique, Centre National de la Recherche Scientifique-Unité Mixte de Recherche 8550, Ecole Normale Supérieure, 24, Rue Lhomond, 75231 Paris, France., 2004, 101, 580-585
article (Gama-Castro2008)
Gama-Castro, S.; Jiménez-Jacinto, V.; Peralta-Gil, M.; Santos-Zavaleta, A.; Peñaloza-Spinola, M. I.; Contreras-Moreira, B.; Segura-Salazar, J.; Muñiz-Rascado, L.; Martínez-Flores, I.; Salgado, H.; Bonavides-Martínez, C.; Abreu-Goodger, C.; Rodríguez-Penagos, C.; Miranda-Ríos, J.; Morett, E.; Merino, E.; Huerta, A. M.; Treviño-Quintanilla, L. & Collado-Vides, J.
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Nucleic Acids Res,
Program of Computational Genomics, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, A.P. 565-A, Cuernavaca, Morelos 62100, Mexico., 2008, 36, D120-D124
article (Gardner2000)
Gardner, T. S.; Cantor, C. R. & Collins, J. J.
Construction of a genetic toggle switch in Escherichia coli.
Nature,
2000, 403, 339-342
article (Geanacopoulos1997)
Geanacopoulos, M. & Adhya, S.
Functional characterization of roles of GalR and GalS as regulators of the gal regulon.
J Bacteriol,
Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892-4255, USA., 1997, 179, 228-234
article (Gene-Wei2009)
Gene-Wei Li, Otto G. Berg, J. E.
Effects of macromolecular crowding and DNA looping on gene regulation kinetics.
Nature Physics,
2009, 5, no. 4, 294-297
article (Geva-Zatorsky2006)
Geva-Zatorsky, N.; Rosenfeld, N.; Itzkovitz, S.; Milo, R.; Sigal, A.; Dekel, E.; Yarnitzky, T.; Liron, Y.; Polak, P.; Lahav, G. & Alon, U.
Oscillations and variability in the p53 system.
Mol Syst Biol,
2006, 2, 2006.0033
article (Guillespie1977)
Gillespie, D.
Exact stochastic simulation of coupled chemical reactions
J. Phys. Chem.,
1977, 81, 2340-2361
article (Glass1973)
Glass, L. & Kauffman, S.
The logical analysis of continuous, non-linear biochemical control networks.
J Theor Bio,
1973, 39, 103-129
book (Goldbeter1996)
Goldbeter, A.
Cambridge (ed.)
Biochemical Oscillations and Cellular Rhythms: The molecular bases of periodic and chaotic behaviour.
Cambridge University Press, 1996
article (Goldbeter1990)
Goldbeter, A.; Dupont, G. & Berridge, M. J.
Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation.
Proc Natl Acad Sci U S A,
1990, 87, 1461-1465
article (Goldbeter1981)
Goldbeter, A. & Koshland, D. E.
An amplified sensitivity arising from covalent modification in biological systems.
Proc Natl Acad Sci U S A,
1981, 78, 6840-6844
article (Gomez-Uribe2007)
Gomez-Uribe, C.; Verghese, G. C. & Mirny, L. A.
Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering.
PLoS Comput Biol,
2007, 3, e246
article (Gonze2002)
Gonze, D.; Halloy, J. & Goldbeter, A.
Robustness of circadian rhythms with respect to molecular noise.
Proc Natl Acad Sci U S A,
2002, 99, 673-678
article (Goodwin1965)
Goodwin, B. C.
Oscillatory behavior in enzymatic control processes.
Adv Enzyme Regul,
1965, 3, 425-438
article (Goss2002)
Goss, T. J.; Janes, B. K. & Bender, R. A.
Repression of glutamate dehydrogenase formation in Klebsiella aerogenes requires two binding sites for the nitrogen assimilation control protein, NAC.
J Bacteriol,
Department of Molecular Cellular and Developmental Biology, University of Michigan, Ann Arbor 48109-1048, USA., 2002, 184, 6966-6975
article (Gouze2002)
Gouzé, J. & Sari, T.
A class of piecewise linear differential equations arising in biological models
Dyn. Syst.,
2002, 17, 299-316.
article (Gowers2005)
Gowers, D. M.; Wilson, G. G. & Halford, S. E.
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.
Proc Natl Acad Sci U S A,
Department of Biochemistry, School of Medical Sciences, University of Bristol, Bristol BS8 1TD, United Kingdom., 2005, 102, 15883-15888
article (Grainger2005)
Grainger, D. C.; Hurd, D.; Harrison, M.; Holdstock, J. & Busby, S. J. W.
Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.
Proc Natl Acad Sci U S A,
School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom. d.grainger@bham.ac.uk, 2005, 102, 17693-17698
article (Griffith1986)
Griffith, J.; Hochschild, A. & Ptashne, M.
DNA loops induced by cooperative binding of lambda repressor.
Nature,
1986, 322, 750-752
article (Guantes2006)
Guantes, R. & Poyatos, J. F.
Dynamical principles of two-component genetic oscillators.
PLoS Comput Biol,
2006, 2, e30
article (Guelzim2002)
Guelzim, N.; Bottani, S.; Bourgine, P. & Képès, F.
Topological and causal structure of the yeast transcriptional regulatory network.
Nat Genet,
ATelier de Génomique Cognitive, Centre National de la Recherche Scientifique ESA 8071, genopole(R), 523 Terrasses de l'Agora, 91000 Evry, France., 2002, 31, 60-63
article (Haber1988)
Haber, R. & Adhya, S.
Interaction of spatially separated protein-DNA complexes for control of gene expression: operator conversions.
Proc Natl Acad Sci U S A,
Laboratory of Molecular Biology, National Cancer Institute, Bethesda, MD 20892., 1988, 85, 9683-9687
article (Hanke2003)
Hanke, A. & Metzler, R.
Entropy loss in long-distance DNA looping.
Biophys J,
Institute for Theoretical Physics, University of Stuttgart, Stuttgart, Germany., 2003, 85, 167-173
techreport (Hayot2006)
Hayot, F. & Jayaprakash, C.
A tutorial on cellular stochasticity and Gillespie’s algorithm.
Department of Neurology, Mount Sinai School of Medicine, New York, Department of Physics, The Ohio State University, Columbus, 2006
article (He1994)
He, B. & Zalkin, H.
Regulation of Escherichia coli purA by purine repressor, one component of a dual control mechanism.
J Bacteriol,
Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907., 1994, 176, 1009-1013
article (Heinrich2002)
Heinrich, R.; Neel, B. G. & Rapoport, T. A.
Mathematical models of protein kinase signal transduction.
Mol Cell,
2002, 9, 957-970
article (Henning2007)
Henning, J.; Koczan, D.; Glass, A.; Karopka, T.; Pahnke, J.; Rolfs, A.; Benecke, R. & Gimsa, U.
Deep brain stimulation in a rat model modulates TH, CaMKIIa and Homer1 gene expression.
Eur J Neurosci,
2007, 25, 239-250
article (Hersen2008)
Hersen, P.; McClean, M. N.; Mahadevan, L. & Ramanathan, S.
Signal processing by the HOG MAP kinase pathway.
Proc Natl Acad Sci U S A,
2008, 105, 7165-7170
article (Horowitz1984)
Horowitz, D. S. & Wang, J. C.
Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling.
J Mol Biol,
1984, 173, 75-91
article (Huang1996)
Huang, C. Y. & Ferrell, J. E.
Ultrasensitivity in the mitogen-activated protein kinase cascade.
Proc Natl Acad Sci U S A,
1996, 93, 10078-10083
article (Huang1994)
Huang, K. J.; Schieberl, J. L. & Igo, M. M.
A distant upstream site involved in the negative regulation of the Escherichia coli ompF gene.
J Bacteriol,
Section of Microbiology, University of California, Davis 95616., 1994, 176, 1309-1315
article (Hugouvieux-Cotte-Pattat1996)
Hugouvieux-Cotte-Pattat, N.; Condemine, G.; Nasser, W. & Reverchon, S.
Regulation of pectinolysis in Erwinia chrysanthemi.
Annu Rev Microbiol,
Laboratoire de Génétique Moléculaire des Microorganismes, UMR-CNRS 5577, Villeurbanne, France., 1996, 50, 213-257
article (Hugouvieux-Cotte-Pattat1992)
Hugouvieux-Cotte-Pattat, N.; Dominguez, H. & Robert-Baudouy, J.
Environmental conditions affect transcription of the pectinase genes of Erwinia chrysanthemi 3937.
J Bacteriol,
Laboratoire de Génétique Moléculaire des Microorganismes, URA-CNRS, Institut National des Sciences Appliquées batiment 406, Villeurbanne, France., 1992, 174, 7807-7818
article (Hugouvieux-Cotte-Pattat1994)
Hugouvieux-Cotte-Pattat, N.; Nasser, W. & Robert-Baudouy, J.
Molecular characterization of the Erwinia chrysanthemi kdgK gene involved in pectin degradation.
J Bacteriol,
Laboratoire de Généteique Moléculaire des Microorganismes, CNRS URA-1486, INSA de Lyon, Villeurbanne, France., 1994, 176, 2386-2392
article (Hutcheon2000)
Hutcheon, B. & Yarom, Y.
Resonance, oscillation and the intrinsic frequency preferences of neurons.
Trends Neurosci,
2000, 23, 216-222
article (Izhikevich2006)
Izhikevich, E. M.
Bursting
Scholarpedia,
2006, 1(3):1300
article (JACOB1961)
JACOB, F. & MONOD, J.
Genetic regulatory mechanisms in the synthesis of proteins.
J Mol Biol,
1961, 3, 318-356
article (Jeong2004)
Jeong, K. S.; Ahn, J. & Khodursky, A. B.
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli.
Genome Biol,
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St. Paul, MN 55108, USA. jeong009@umn.edu, 2004, 5, R86
article (Jun2006)
Jun, S. & Mulder, B.
Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome.
Proc Natl Acad Sci U S A,
Stichting voor Fundamenteel Onderzoek der Materie (FOM) Institute for Atomic and Molecular Physics (AMOLF), Kruislaan 407, 1098 SJ, Amsterdam, The Netherlands. jun@amolf.nl, 2006, 103, 12388-12393
article (Kahramanoglou2006)
Kahramanoglou, C.; Webster, C. L.; El-Robh, M. S.; Belyaeva, T. A. & Busby, S. J. W.
Mutational analysis of the Escherichia coli melR gene suggests a two-state concerted model to explain transcriptional activation and repression in the melibiose operon.
J Bacteriol,
School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom., 2006, 188, 3199-3207
article (Kandel2004)
Kandel, E. R.
The molecular biology of memory storage: a dialog between genes and synapses.
Biosci Rep,
2004, 24, 475-522
article (Kania1977)
Kania, J. & Müller-Hill, B.
Construction, isolation and implications of repressor-galactosidase - beta-galactosidase hybrid molecules.
Eur J Biochem,
1977, 79, 381-386
article (Karimova1998)
Karimova, G.; Pidoux, J.; Ullmann, A. & Ladant, D.
A bacterial two-hybrid system based on a reconstituted signal transduction pathway.
Proc Natl Acad Sci U S A,
Unité de Biochimie Cellulaire (Centre National de la Recherche Scientifique, Unité de Recherche Associée 1129), Institut Pasteur, 75724 Paris Cedex 15, France., 1998, 95, 5752-5756
article (Kashtan2007)
Kashtan, N.; Noor, E. & Alon, U.
Varying environments can speed up evolution.
Proc Natl Acad Sci U S A,
2007, 104, 13711-13716
article (Kepler2001)
Kepler, T. B. & Elston, T. C.
Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.
Biophys J,
Santa Fe Institute, Santa Fe, New Mexico 87501, USA. kepler@santafe.edu, 2001, 81, 3116-3136
unpublished (Kepseu)
Kepseu W.D., W. P. & J-A, S.
Dynamics of the transition to pathogenicity in Erwinia chrysanthemi
article (Kholodenko2000)
Kholodenko, B. N.
Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.
Eur J Biochem,
2000, 267, 1583-1588
article (Koninck1998)
Koninck, P. D. & Schulman, H.
Sensitivity of CaM kinase II to the frequency of Ca2+ oscillations.
Science,
1998, 279, 227-230
article (Kornacker1998)
Kornacker, M. G.; Remsburg, B. & Menzel, R.
Gene activation by the AraC protein can be inhibited by DNA looping between AraC and a LexA repressor that interacts with AraC: possible applications as a two-hybrid system.
Mol Microbiol,
Department of Macromolecular Structure, Bristol-Myers Squibb Pharmaceutical Research Institute, Route 206 and Province Line Road, Princeton, NJ 08543-4000, USA. KornackM@BMS.com, 1998, 30, 615-624
article (Kramer2005)
Kramer, B. P. & Fussenegger, M.
Hysteresis in a synthetic mammalian gene network.
Proc Natl Acad Sci U S A,
2005, 102, 9517-9522
article (Krin2003)
Krin, E.; Laurent-Winter, C.; Bertin, P. N.; Danchin, A. & Kolb, A.
Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12.
J Bacteriol,
Unité de Génétique des Génomes Bactériens, Institut Pasteur, 75724 Paris Cedex 15, France. ekrin@pasteur.fr, 2003, 185, 3139-3146
article (Kussell2005)
Kussell, E. & Leibler, S.
Phenotypic diversity, population growth, and information in fluctuating environments.
Science,
Laboratory of Living Matter and Center for Studies in Physics and Biology, Rockefeller University, 1230 York Avenue, Box 34, New York, NY 10021-6399, USA. kussele@rockefeller.edu, 2005, 309, 2075-2078
article (Kepes2005)
Képès, F.
[Epigenetics as an aspect of post-genomics]
Med Sci (Paris),
Programme d'Epigénomique, Genopole, ATelier de Génomique Cognitive, CNRS UMR 8071/Genopole, 93, rue Henri-Rochefort, 91000 Evry, France. Francois.Kepes@genopole.cnrs.fr, 2005, 21, 371-376
article (Kepes2004)
Képès, F.
Periodic transcriptional organization of the E.coli genome.
J Mol Biol,
2004, 340, 957-964
article (Kepes2003)
Képès, F.
Periodic epi-organization of the yeast genome revealed by the distribution of promoter sites.
J Mol Biol,
2003, 329, 859-865
article (Francois2003)
Képès, F. & Vaillant, C.
Transcription-Based Solenoidal Model of Chromosomes
Complexus,
2003, 1-No 4, 171-180
article (Laat2007)
de Laat, W.
Long-range DNA contacts: romance in the nucleus?
Curr Opin Cell Biol,
2007, 19, 317-320
article (Laat2003)
de Laat, W. & Grosveld, F.
Spatial organization of gene expression: the active chromatin hub.
Chromosome Res,
2003, 11, 447-459
article (Larson1992)
Larson, T. J.; Cantwell, J. S. & van Loo-Bhattacharya, A. T.
Interaction at a distance between multiple operators controls the adjacent, divergently transcribed glpTQ-glpACB operons of Escherichia coli K-12.
J Biol Chem,
Department of Biochemistry and Nutrition, Virginia Polytechnic Institute and State University, Blacksburg 24061-0308., 1992, 267, 6114-6121
phdthesis (LAUTIER2007)
LAUTIER, T.
Rôle de la protéine associée au nucléoïde Fis dans le contrôle de la virulence chez la bactérie phytopathogène Erwinia chrysanthemi.
L’Institut National des Sciences Appliquées de Lyon, 2007
article (Lee1993)
Lee, H. S.; Ishihama, A. & Kustu, S.
The C terminus of the alpha subunit of RNA polymerase is not essential for transcriptional activation of sigma 54 holoenzyme.
J Bacteriol,
Department of Plant Pathology, University of California, Berkeley 94720., 1993, 175, 2479-2482
article (Lercher2006)
Lercher, M. J. & Hurst, L. D.
Co-expressed yeast genes cluster over a long range but are not regularly spaced.
J Mol Biol,
Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, UK. m.j.lercher@bath.ac.uk, 2006, 359, 825-831
article (Lewis2003)
Lewis, J.
Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator.
Curr Biol,
2003, 13, 1398-1408
article (Li2008a)
Li, D. & Li, C.
Noise-induced dynamics in the mixed-feedback-loop network motif.
Phys Rev E Stat Nonlin Soft Matter Phys,
Centre for Nonlinear and Complex Systems, School of Electronic Engineering, University of Electronic Science and Technology of China, Chengdu 610054, People's Republic of China., 2008, 77, 011903
article (Li2009)
Li, G.; G.Berg, O. & Elf, J.
Effects of macromolecular crowding and DNA looping on gene regulation kinetics
Nature Physics,
2009, 5 No 4, 237-308
unpublished (Li2008)
Li, G.; G.Berg, O. & Elf, J.
Targe location by DNA-Binding Proteins: Effects of Roadblocks and DNA looping
2008
article (Li1990)
Li, Y. & Goldbeter, A.
Frequency encoding of pulsatile signals of cAMP based on receptor desensitization in Dictyostelium cells.
J Theor Biol,
1990, 146, 355-367
article (Li1989)
Li, Y. & Goldbeter, A.
Frequency specificity in intercellular communication. Influence of patterns of periodic signaling on target cell responsiveness.
Biophys J,
1989, 55, 125-145
article (Lia2003)
Lia, G.; Bensimon, D.; Croquette, V.; Allemand, J.; Dunlap, D.; Lewis, D. E. A.; Adhya, S. & Finzi, L.
Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping.
Proc Natl Acad Sci U S A,
Department of Biology, University of Milan, 20133 Milan, Italy., 2003, 100, 11373-11377
article (Lipan2008)
Lipan, O.
Systems biology. Enlightening Rhythms.
Science,
2008, 319, 417-418
article (Lipan2005)
Lipan, O. & Wong, W. H.
The use of oscillatory signals in the study of genetic networks.
Proc Natl Acad Sci U S A,
2005, 102, 7063-7068
article (Little1999)
Little, J. W.; Shepley, D. P. & Wert, D. W.
Robustness of a gene regulatory circuit.
EMBO J,
Departments of Biochemistry, University of Arizona, Tucson, AZ 85721, USA. jlittle@u.arizona.edu, 1999, 18, 4299-4307
article (Lobell1991)
Lobell, R. B. & Schleif, R. F.
AraC-DNA looping: orientation and distance-dependent loop breaking by the cyclic AMP receptor protein.
J Mol Biol,
Department of Biochemistry, Brandeis University, Waltham, MA 02254., 1991, 218, 45-54
unpublished (Locasale)
Locasale, J. W.
Signal duration and the time scale dependence of signal integration in biochemical pathways.
2008
article (Loinger2007)
Loinger, A.; Lipshtat, A.; Balaban, N. Q. & Biham, O.
Stochastic simulations of genetic switch systems.
Phys Rev E Stat Nonlin Soft Matter Phys,
2007, 75, 021904
article (Lomvardas2006)
Lomvardas, S.; Barnea, G.; Pisapia, D. J.; Mendelsohn, M.; Kirkland, J. & Axel, R.
Interchromosomal interactions and olfactory receptor choice.
Cell,
Department of Biochemistry and Molecular Biophysics and Howard Hughes Medical Institute, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA., 2006, 126, 403-413
article (Lu1999)
Lu, C. D. & Abdelal, A. T.
Role of ArgR in activation of the ast operon, encoding enzymes of the arginine succinyltransferase pathway in Salmonella typhimurium.
J Bacteriol,
Department of Biology, Georgia State University, Atlanta, Georgia, USA., 1999, 181, 1934-1938
article (Lyubchenko1997)
Lyubchenko, Y. L.; Shlyakhtenko, L. S.; Aki, T. & Adhya, S.
Atomic force microscopic demonstration of DNA looping by GalR and HU.
Nucleic Acids Res,
Department of Microbiology, Arizona State University, Tempe 85287-2701, USA., 1997, 25, 873-876
article (Mackey1977)
Mackey, M. C. & Glass, L.
Oscillation and chaos in physiological control systems.
Science,
1977, 197, 287-289
article (Majumdar1984)
Majumdar, A. & Adhya, S.
Demonstration of two operator elements in gal: in vitro repressor binding studies.
Proc Natl Acad Sci U S A,
1984, 81, 6100-6104
article (Mandal1990)
Mandal, N.; Su, W.; Haber, R.; Adhya, S. & Echols, H.
DNA looping in cellular repression of transcription of the galactose operon.
Genes Dev,
Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892., 1990, 4, 410-418
article (Mangan2006)
Mangan, S.; Itzkovitz, S.; Zaslaver, A. & Alon, U.
The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli.
J Mol Biol,
2006, 356, 1073-1081
article (Marenduzzo2007)
Marenduzzo, D.; Faro-Trindade, I. & Cook, P. R.
What are the molecular ties that maintain genomic loops?
Trends Genet,
School of Physics, University of Edinburgh, Mayfield Road, Edinburgh, UK., 2007, 23, 126-133
article (Marenduzzo2006)
Marenduzzo, D.; Micheletti, C. & Cook, P. R.
Entropy-driven genome organization.
Biophys J,
Mathematics Institute, University of Warwick, Coventry, United Kingdom., 2006, 90, 3712-3721
article (Marhl2006)
Marhl, M.; Perc, M. & Schuster, S.
A minimal model for decoding of time-limited Ca2+ oscillations.
Biophys Chem,
2006, 120, 161-167
article (Marhl2005)
Marhl, M.; Perc, M. & Schuster, S.
Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations.
FEBS Lett,
2005, 579, 5461-5465
article (Martinez-Antonio2003)
Martínez-Antonio, A. & Collado-Vides, J.
Identifying global regulators in transcriptional regulatory networks in bacteria.
Curr Opin Microbiol,
Program of Computational Genomics, CIFN, Universidad Nacional Autónoma de México A. P. 565-A Cuernavaca, 62100, Morelos, Mexico. agustino@cifn.unam.mx, 2003, 6, 482-489
article (Matthews1992)
Matthews, K. S.
DNA looping.
Microbiol Rev,
Cell Biology, Rice University, Houston, Texas 77251., 1992, 56, 123-136
article (Mazurie2005)
Mazurie, A.; Bottani, S. & Vergassola, M.
An evolutionary and functional assessment of regulatory network motifs.
Genome Biol,
2005, 6, R35
article (McClean2007)
McClean, M. N.; Mody, A.; Broach, J. R. & Ramanathan, S.
Cross-talk and decision making in MAP kinase pathways.
Nat Genet,
2007, 39, 409-414
article (Mercier2008)
Mercier, R.; Petit, M.; Schbath, S.; Robin, S.; Karoui, M. E.; Boccard, F. & Espéli, O.
The MatP/matS site-specific system organizes the terminus region of the E. coli chromosome into a macrodomain.
Cell,
Centre de Génétique Moléculaire du CNRS, 91198 Gif-sur-Yvette, France., 2008, 135, 475-485
article (Mettetal2008)
Mettetal, J. T.; Muzzey, D.; Gómez-Uribe, C. & van Oudenaarden, A.
The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae.
Science,
2008, 319, 482-484
article (Moore1983)
Moore, C. L.; Klevan, L.; Wang, J. C. & Griffith, J. D.
Gyrase . DNA complexes visualized as looped structures by electron microscopy.
J Biol Chem,
1983, 258, 4612-4617
article (Moran1968)
Moran, F.; Nasuno, S. & Starr, M. P.
Extracellular and intracellular polygllacturonic acid trans-eliminases of Erwinia carotovora.
Arch Biochem Biophys,
1968, 123, 298-306
article (Morelli2009)
Morelli, M. J.; Wolde, P. R. T. & Allen, R. J.
DNA looping provides stability and robustness to the bacteriophage lambda switch.
Proc Natl Acad Sci U S A,
FOM Institute for Atomic and Molecular Physics, Amsterdam, The Netherlands., 2009, 106, 8101-8106
book (Murray1989)
Murray, J.
Mathematical Biology
Springer, 1989
article (Mueller-Hill2006)
Müller-Hill, B.
What is life? The paradigm of DNA and protein cooperation at high local concentrations.
Mol Microbiol,
2006, 60, 253-255
article (Mueller-Hill1998)
Müller-Hill, B.
The function of auxiliary operators.
Mol Microbiol,
1998, 29, 13-18
book (Mueller-Hill1996)
Müller-Hill, B.
de Gruyter, W. (ed.)
The lac Operon: a short history of a genetic paradigm
1996
article (Nakashima1991)
Nakashima, K.; Kanamaru, K.; Aiba, H. & Mizuno, T.
Signal transduction and osmoregulation in Escherichia coli. A novel type of mutation in the phosphorylation domain of the activator protein, OmpR, results in a defect in its phosphorylation-dependent DNA binding.
J Biol Chem,
Laboratory of Microbiology, School of Agriculture, Nagoya University, Japan., 1991, 266, 10775-10780
article (Nasser2007)
Nasser, W. & Reverchon, S.
New insights into the regulatory mechanisms of the LuxR family of quorum sensing regulators.
Anal Bioanal Chem,
Unité de Microbiologie et Génétique, UMR CNRS-INSA-Université Lyon 1 5122, Domaine Scientifique de la Doua, 10 rue R. Dubois, bât A. Lwoff, 69622, Villeurbanne Cedex, France. William.nasser@insa-lyon.fr, 2007, 387, 381-390
article (Novick1957)
Novick, A. & Weiner, M.
ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON.
Proc Natl Acad Sci U S A,
DEPARTMENT OF MICROBIOLOGY AND COMMITTEE ON BIOPHYSICS, UNIVERSITY OF CHICAGO., 1957, 43, 553-566
article (Novak2008)
Novák, B. & Tyson, J. J.
Design principles of biochemical oscillators.
Nat Rev Mol Cell Biol,
2008, 9, 981-991
article (Oehler1994)
Oehler, S.; Amouyal, M.; Kolkhof, P.; von Wilcken-Bergmann, B. & Müller-Hill, B.
Quality and position of the three lac operators of E. coli define efficiency of repression.
EMBO J,
1994, 13, 3348-3355
article (Oehler1990)
Oehler, S.; Eismann, E. R.; Krämer, H. & Müller-Hill, B.
The three operators of the lac operon cooperate in repression.
EMBO J,
1990, 9, 973-979
article (Ohlsson2007)
Ohlsson, R. & Göndör, A.
The 4C technique: the 'Rosetta stone' for genome biology in 3D?
Curr Opin Cell Biol,
Genetics, Norbyvägen 18A, Evolution Biology Centre, Uppsala University, S-752 36 Uppsala, Sweden. rolf.ohlsson@ebc.uu.se, 2007, 19, 321-325
article (Ozbudak2004)
Ozbudak, E. M.; Thattai, M.; Lim, H. N.; Shraiman, B. I. & Oudenaarden, A. V.
Multistability in the lactose utilization network of Escherichia coli.
Nature,
2004, 427, 737-740
article (Pal2008)
Pal, R.; Basu, D. & Banerjee, M.
Modelling of phytoplankton allelopathy with Monod-Haldane-type functional response-A mathematical study.
Biosystems,
2008
article (Peekhaus1998)
Peekhaus, N. & Conway, T.
Positive and negative transcriptional regulation of the Escherichia coli gluconate regulon gene gntT by GntR and the cyclic AMP (cAMP)-cAMP receptor protein complex.
J Bacteriol,
Department of Microbiology, The Ohio State University, Columbus 43210-1292, USA. peekhaus.1@osu.edu, 1998, 180, 1777-1785
article (Perlmutter2006)
Perlmutter, J. S. & Mink, J. W.
Deep brain stimulation.
Annu Rev Neurosci,
2006, 29, 229-257
article (Phillips1989)
Phillips, S. E.; Manfield, I.; Parsons, I.; Davidson, B. E.; Rafferty, J. B.; Somers, W. S.; Margarita, D.; Cohen, G. N.; Saint-Girons, I. & Stockley, P. G.
Cooperative tandem binding of met repressor of Escherichia coli.
Nature,
Astbury Department of Biophysics, University of Leeds, UK., 1989, 341, 711-715
article (Plumbridge1995)
Plumbridge, J.
Co-ordinated regulation of amino sugar biosynthesis and degradation: the NagC repressor acts as both an activator and a repressor for the transcription of the glmUS operon and requires two separated NagC binding sites.
EMBO J,
Institut de Biologie Physico-chimique (URA1139), Paris, France., 1995, 14, 3958-3965
article (Plumbridge1998)
Plumbridge, J. & Kolb, A.
DNA bending and expression of the divergent nagE-B operons.
Nucleic Acids Res,
Institut de Biologie Physico-chimique (UPR9073), 13 rue P. et M. Curie, 75005 Paris, France. plumbridge@ibpc.fr, 1998, 26, 1254-1260
article (Plumbridge1993)
Plumbridge, J. & Kolb, A.
DNA loop formation between Nag repressor molecules bound to its two operator sites is necessary for repression of the nag regulon of Escherichia coli in vivo.
Mol Microbiol,
Institut de Biologie Physico-chimique (URA1139), Paris, France., 1993, 10, 973-981
article (Plumbridge1991)
Plumbridge, J. & Kolb, A.
CAP and Nag repressor binding to the regulatory regions of the nagE-B and manX genes of Escherichia coli.
J Mol Biol,
Institut de Biologie Physico-chimique, URA1139, Paris, France., 1991, 217, 661-679
article (Plumbridge2004)
Plumbridge, J. & Pellegrini, O.
Expression of the chitobiose operon of Escherichia coli is regulated by three transcription factors: NagC, ChbR and CAP.
Mol Microbiol,
Institut de Biologie Physico-Chimique (CNRS UPR9073), 13, rue Pierre et Marie Curie, 75005 Paris, France. Jackie.Plumbridge@ibpc.fr, 2004, 52, 437-449
article (Porco1997)
Porco, A.; Peekhaus, N.; Bausch, C.; Tong, S.; Isturiz, T. & Conway, T.
Molecular genetic characterization of the Escherichia coli gntT gene of GntI, the main system for gluconate metabolism.
J Bacteriol,
School of Biological Sciences, University of Nebraska-Lincoln, 68588-0118, USA., 1997, 179, 1584-1590
article (Pouget2006)
Pouget, N.; Turlan, C.; Destainville, N.; Salomé, L. & Chandler, M.
IS911 transpososome assembly as analysed by tethered particle motion.
Nucleic Acids Res,
Laboratoire de Microbiologie et Génétique Moléculaire, UMR CNRS 5100, 118 route de Narbonne, 31062 Toulouse cedex, France., 2006, 34, 4313-4323
article (Pruess2006)
Prüss, B. M.; Besemann, C.; Denton, A. & Wolfe, A. J.
A complex transcription network controls the early stages of biofilm development by Escherichia coli.
J Bacteriol,
Department of Veterinary and Microbiological Sciences, North Dakota State University, 1523 Centennial Blvd., Fargo, ND 58105, USA. Birgit.Pruess@ndsu.edu, 2006, 188, 3731-3739
article (Qaidi2008)
Qaidi, S. E. & Plumbridge, J.
Switching control of expression of ptsG from the Mlc regulon to the NagC regulon.
J Bacteriol,
Institut de Biologie Physico-Chimique, UPR9073-CNRS, 13 rue Pierre et Marie Curie, 75005 Paris, France., 2008, 190, 4677-4686
article (Qiao2007)
Qiao, L.; Nachbar, R. B.; Kevrekidis, I. G. & Shvartsman, S. Y.
Bistability and oscillations in the huang-ferrell model of MAPK signaling.
PLoS Comput Biol,
2007, 3, e184
article (Rampersaud1994)
Rampersaud, A.; Harlocker, S. L. & Inouye, M.
The OmpR protein of Escherichia coli binds to sites in the ompF promoter region in a hierarchical manner determined by its degree of phosphorylation.
J Biol Chem,
Department of Pathology, Ohio State University, Columbus 43210., 1994, 269, 12559-12566
article (Rao2002)
Rao, C. V.; Wolf, D. M. & Arkin, A. P.
Control, exploitation and tolerance of intracellular noise.
Nature,
Department of Bioengineering, University of California, Berkeley, California 94720, USA. c_rao@lbl.gov, 2002, 420, 231-237
phdthesis (Ray1999)
Ray, W. K.
Characterization of AgaR and YihW, Members of the DeoR Family of Transcriptional Regulators, and GlpE, a Rhodanese Belonging to the GlpR Regulon, Also a Member of the DeoR Family
Faculty of the Virginia Polytechnic Institute and State, 1999
article (Reitzer1986)
Reitzer, L. J. & Magasanik, B.
Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter.
Cell,
1986, 45, 785-792
article (Resibois1984)
Resibois, A.; Colet, M.; Faelen, M.; Schoonejans, E. & Toussaint, A.
phiEC2, a new generalized transducing phage of Erwinia chrysanthemi.
Virology,
Laboratoire d'Histolvie, Faculté de Médecine, Faculté des Sciences, Université Libre de Bruxelles, Brussels, Belgium., 1984, 137, 102-112
article (Reverchon1991)
Reverchon, S.; Nasser, W. & Robert-Baudouy, J.
Characterization of kdgR, a gene of Erwinia chrysanthemi that regulates pectin degradation.
Mol Microbiol,
Laboratoire de Génétique Moléculaire des Microorganismes, Institut National des Sciences Appliquées, Villeurbanne, France., 1991, 5, 2203-2216
article (Rice1996)
Rice, P. A.; Yang, S.; Mizuuchi, K. & Nash, H. A.
Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn.
Cell,
Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA., 1996, 87, 1295-1306
article (Rodionov2004)
Rodionov, D. A.; Gelfand, M. S. & Hugouvieux-Cotte-Pattat, N.
Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria.
Microbiology,
State Scientific Centre GosNIIGenetika, Moscow, 117545, Russia. rodionov@genetika.ru, 2004, 150, 3571-3590
article (Roeder1985)
Roeder, D. L. & Collmer, A.
Marker-exchange mutagenesis of a pectate lyase isozyme gene in Erwinia chrysanthemi.
J Bacteriol,
1985, 164, 51-56
article (Rosario2005)
Rosario, C. J. & Bender, R. A.
Importance of tetramer formation by the nitrogen assimilation control protein for strong repression of glutamate dehydrogenase formation in Klebsiella pneumoniae.
J Bacteriol,
Department of Molecular Cellular and Developmental Biology, The University of Michigan, Ann Arbor, MI 48109-1048, USA., 2005, 187, 8291-8299
article (Rosenfeld2002)
Rosenfeld, N.; Elowitz, M. B. & Alon, U.
Negative autoregulation speeds the response times of transcription networks.
J Mol Biol,
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 76100, Israel., 2002, 323, 785-793
article (Rosenfeld2006)
Rosenfeld, N.; Perkins, T. J.; Alon, U.; Elowitz, M. B. & Swain, P. S.
A fluctuation method to quantify in vivo fluorescence data.
Biophys J,
2006, 91, 759-766
article (Rosenfeld2005)
Rosenfeld, N.; Young, J. W.; Alon, U.; Swain, P. S. & Elowitz, M. B.
Gene regulation at the single-cell level.
Science,
2005, 307, 1962-1965
article (Rouanet2004)
Rouanet, C.; Reverchon, S.; Rodionov, D. A. & Nasser, W.
Definition of a consensus DNA-binding site for PecS, a global regulator of virulence gene expression in Erwinia chrysanthemi and identification of new members of the PecS regulon.
J Biol Chem,
2004, 279, 30158-30167
article (Saiz2008)
Saiz, L. & Vilar, J. M. G.
Ab initio thermodynamic modeling of distal multisite transcription regulation.
Nucleic Acids Res,
2008, 36, 726-731
article (Saiz2006)
Saiz, L. & Vilar, J. M. G.
DNA looping: the consequences and its control.
Curr Opin Struct Biol,
2006, 16, 344-350
article (Samarasinghe2008)
Samarasinghe, S.; El-Robh, M. S.; Grainger, D. C.; Zhang, W.; Soultanas, P. & Busby, S. J. W.
Autoregulation of the Escherichia coli melR promoter: repression involves four molecules of MelR.
Nucleic Acids Res,
School of Biosciences, The University of Birmingham, Edgbaston, Birmingham B15 2TT, UK., 2008, 36, 2667-2676
book (Sambrook1989)
Sambrook J, Fritsch E. F, M. T.
Harbor, C. S. (ed.)
Molecular cloning: a laboratory manual
Cold Spring Harbor Laboratory, 1989
article (Samson2005)
Samson, R.; Legendre, J. B.; Christen, R.; Saux, M. F.; Achouak, W. & Gardan, L.
Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov.
Int J Syst Evol Microbiol,
UMR de Pathologie Végétale INRA INH Université, BP 57, 42 rue G. Morel, 49071 Beaucouzé, France. samson@angers.inra.fr, 2005, 55, 1415-1427
article (Savageau1974)
Savageau, M. A.
Comparison of classical and autogenous systems of regulation in inducible operons.
Nature,
1974, 252, 546-549
article (Schafer1991)
Schafer, D. A.; Gelles, J.; Sheetz, M. P. & Landick, R.
Transcription by single molecules of RNA polymerase observed by light microscopy.
Nature,
Department of Cell Biology, Washington University, St. Louis, Missouri 63130., 1991, 352, 444-448
article (Schleif1992)
Schleif, R.
DNA LOOPING
Annu. Rev. Biochem.,
1992, 61, 199-223
article (Schleif1992a)
Schleif, R.
DNA looping.
Annu Rev Biochem,
Biology Department, Johns Hopkins University, Baltimore, Maryland 21218., 1992, 61, 199-223
article (Schultz1991)
Schultz, S. C.; Shields, G. C. & Steitz, T. A.
Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees.
Science,
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511., 1991, 253, 1001-1007
article (Segel1986)
Segel, L. A.; Goldbeter, A.; Devreotes, P. N. & Knox, B. E.
A mechanism for exact sensory adaptation based on receptor modification.
J Theor Biol,
1986, 120, 151-179
article (Semsey2002)
Semsey, S.; Geanacopoulos, M.; Lewis, D. E. A. & Adhya, S.
Operator-bound GalR dimers close DNA loops by direct interaction: tetramerization and inducer binding.
EMBO J,
Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute/ National Institutes of Health, Bethesda, MD 20892-4264, USA., 2002, 21, 4349-4356
article (Sepulchre2007)
Sepulchre, J.; Reverchon, S. & Nasser, W.
Modeling the onset of virulence in a pectinolytic bacterium.
J Theor Biol,
2007, 244, 239-257
article (Sequencing2005)
Sequencing, C. & Consortium, A.
Initial sequence of the chimpanzee genome and comparison with the human genome.
Nature,
2005, 437, 69-87
article (Shadel1992)
Shadel, G. S. & Baldwin, T. O.
Identification of a distantly located regulatory element in the luxD gene required for negative autoregulation of the Vibrio fischeri luxR gene.
J Biol Chem,
M University, College Station 77843., 1992, 267, 7690-7695
article (Shankaran2007a)
Shankaran, H.; Resat, H. & Wiley, H. S.
Cell surface receptors for signal transduction and ligand transport: a design principles study.
PLoS Comput Biol,
2007, 3, e101
article (Shankaran2007)
Shankaran, H.; Wiley, H. S. & Resat, H.
Receptor downregulation and desensitization enhance the information processing ability of signalling receptors.
BMC Syst Biol,
2007, 1, 48
article (Shin1995)
Shin, S. & Park, C.
Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR.
J Bacteriol,
Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Yusong-Ku, Taejon., 1995, 177, 4696-4702
article (Smolen2007)
Smolen, P.
A model of late long-term potentiation simulates aspects of memory maintenance.
PLoS ONE,
2007, 2, e445
article (Smolen2006)
Smolen, P.; Baxter, D. A. & Byrne, J. H.
A model of the roles of essential kinases in the induction and expression of late long-term potentiation.
Biophys J,
2006, 90, 2760-2775
article (Smolen1998)
Smolen, P.; Baxter, D. A. & Byrne, J. H.
Frequency selectivity, multistability, and oscillations emerge from models of genetic regulatory systems.
Am J Physiol,
1998, 274, C531-C542
article (Sohanpal2004)
Sohanpal, B. K.; El-Labany, S.; Lahooti, M.; Plumbridge, J. A. & Blomfield, I. C.
Integrated regulatory responses of fimB to N-acetylneuraminic (sialic) acid and GlcNAc in Escherichia coli K-12.
Proc Natl Acad Sci U S A,
Department of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, United Kingdom., 2004, 101, 16322-16327
article (Song2007)
Song, H.; Smolen, P.; Av-Ron, E.; Baxter, D. A. & Byrne, J. H.
Dynamics of a minimal model of interlocked positive and negative feedback loops of transcriptional regulation by cAMP-response element binding proteins.
Biophys J,
2007, 92, 3407-3424
article (Soule2003)
Soulé, C.
Graphic requirements for multistationarity
Complexus,
2003, 1, 123-133
article (Stauffer1998)
Stauffer, L. T. & Stauffer, G. V.
Spacing and orientation requirements of GcvA-binding sites 3 and 2 and the Lrp-binding region for gcvT::lacZ expression in Escherichia coli.
Microbiology,
Department of Microbiology, University of Iowa, Iowa City 52242, USA., 1998, 144 ( Pt 5), 1417-1422
article (Stauffer1998a)
Stauffer, L. T. & Stauffer, G. V.
Roles for GcvA-binding sites 3 and 2 and the Lrp-binding region in gcvT::lacZ expression in Escherichia coli.
Microbiology,
Department of Microbiology, University of Iowa, Iowa City 52242, USA. george-stauffer@uiowa.edu, 1998, 144 ( Pt 10), 2865-2872
article (Su1990)
Su, W.; Porter, S.; Kustu, S. & Echols, H.
DNA-looping and enhancer activity: association between DNA-bound NtrC activator and RNA polymerase at the bacterial glnA promoter.
Proc Natl Acad Sci U S A,
Department of Molecular and Cell Biology, University of California, Berkeley 94720., 1990, 87, 5504-5508
unpublished (Sumedha)
Sumedha & Weigt, M.
Agglomeration of DNA-looping proteins
2008
article (Sumedha2008)
Sumedha & Weigt, M.
A thermodynamic model for the agglomeration of DNA-looping proteins
Journal of Statistical Mechanics: Theory and Experiment,
2008, 11, 11005
article (Swinger2004)
Swinger, K. K. & Rice, P. A.
IHF and HU: flexible architects of bent DNA.
Curr Opin Struct Biol,
Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL 60637, USA., 2004, 14, 28-35
article (Thomas1980)
Thomas, R.
[The biological role of positive and negative feedback loops]
Bull Mem Acad R Med Belg,
1980, 135, 664-673
article (Towles2009)
Towles, K. B.; Beausang, J. F.; Garcia, H. G.; Phillips, R. & Nelson, P. C.
First-principles calculation of DNA looping in tethered particle experiments.
Phys Biol,
Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA 19104, USA., 2009, 6, 25001
article (Travers2001)
Travers, A.; Schneider, R. & Muskhelishvili, G.
DNA supercoiling and transcription in Escherichia coli: The FIS connection.
Biochimie,
MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. aat@mrc-lmb.cam.ac.uk, 2001, 83, 213-217
article (Tuskan2006)
Tuskan, G. A.; Difazio, S.; Jansson, S.; Bohlmann, J.; Grigoriev, I.; Hellsten, U.; Putnam, N.; Ralph, S.; Rombauts, S.; Salamov, A.; Schein, J.; Sterck, L.; Aerts, A.; Bhalerao, R. R.; Bhalerao, R. P.; Blaudez, D.; Boerjan, W.; Brun, A.; Brunner, A.; Busov, V.; Campbell, M.; Carlson, J.; Chalot, M.; Chapman, J.; Chen, G.; Cooper, D.; Coutinho, P. M.; Couturier, J.; Covert, S.; Cronk, Q.; Cunningham, R.; Davis, J.; Degroeve, S.; Déjardin, A.; Depamphilis, C.; Detter, J.; Dirks, B.; Dubchak, I.; Duplessis, S.; Ehlting, J.; Ellis, B.; Gendler, K.; Goodstein, D.; Gribskov, M.; Grimwood, J.; Groover, A.; Gunter, L.; Hamberger, B.; Heinze, B.; Helariutta, Y.; Henrissat, B.; Holligan, D.; Holt, R.; Huang, W.; Islam-Faridi, N.; Jones, S.; Jones-Rhoades, M.; Jorgensen, R.; Joshi, C.; Kangasjärvi, J.; Karlsson, J.; Kelleher, C.; Kirkpatrick, R.; Kirst, M.; Kohler, A.; Kalluri, U.; Larimer, F.; Leebens-Mack, J.; Leplé, J.; Locascio, P.; Lou, Y.; Lucas, S.; Martin, F.; Montanini, B.; Napoli, C.; Nelson, D. R.; Nelson, C.; Nieminen, K.; Nilsson, O.; Pereda, V.; Peter, G.; Philippe, R.; Pilate, G.; Poliakov, A.; Razumovskaya, J.; Richardson, P.; Rinaldi, C.; Ritland, K.; Rouzé, P.; Ryaboy, D.; Schmutz, J.; Schrader, J.; Segerman, B.; Shin, H.; Siddiqui, A.; Sterky, F.; Terry, A.; Tsai, C.; Uberbacher, E.; Unneberg, P.; Vahala, J.; Wall, K.; Wessler, S.; Yang, G.; Yin, T.; Douglas, C.; Marra, M.; Sandberg, G.; de Peer, Y. V. & Rokhsar, D.
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Science,
Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA. gtk@ornl.gov, 2006, 313, 1596-1604
article (Tyson2002)
Tyson, J. J.; Csikasz-Nagy, A. & Novak, B.
The dynamics of cell cycle regulation.
Bioessays,
2002, 24, 1095-1109
article (Valens2004)
Valens, M.; Penaud, S.; Rossignol, M.; Cornet, F. & Boccard, F.
Macrodomain organization of the Escherichia coli chromosome.
EMBO J,
Centre de Génétique Moléculaire du CNRS, Avenue de la Terrasse, Gif-sur-Yvette, France., 2004, 23, 4330-4341
article (Valentin-Hansen1986)
Valentin-Hansen, P.; Albrechtsen, B. & Larsen, J. E. L.
DNA-protein recognition: demonstration of three genetically separated operator elements that are required for repression of the Escherichia coli deoCABD promoters by the DeoR repressor.
EMBO J,
1986, 5, 2015-2021
article (Ventura2008)
Ventura, A. C.; Sepulchre, J. & Merajver, S. D.
A hidden feedback in signaling cascades is revealed.
PLoS Comput Biol,
2008, 4, e1000041
article (Vilar2002)
Vilar, J. M. G.; Kueh, H. Y.; Barkai, N. & Leibler, S.
Mechanisms of noise-resistance in genetic oscillators.
Proc Natl Acad Sci U S A,
2002, 99, 5988-5992
article (Vilar2003)
Vilar, J. M. G. & Leibler, S.
DNA looping and physical constraints on transcription regulation.
J Mol Biol,
2003, 331, 981-989
article (Vilar2005)
Vilar, J. M. G. & Saiz, L.
DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.
Curr Opin Genet Dev,
Computational Biology Center, Memorial Sloan-Kettering Cancer Center, 307 East 63rd Street, New York, NY 10021, USA. vilar@cbio.mskcc.org, 2005, 15, 136-144
article (Wang1996)
Wang, J. H. & Kelly, P. T.
The balance between postsynaptic Ca(2+)-dependent protein kinase and phosphatase activities controlling synaptic strength.
Learn Mem,
1996, 3, 170-181
article (Wang2007)
Wang, Z.; Hou, Z.; Xin, H. & Zhang, Z.
Engineered internal noise stochastic resonator in gene network: a model study.
Biophys Chem,
Teda Bio-X Research Center, College of Food Engineering and Biotechnology, Tianjin University of Science and Technology, No. 29, The 13th Avenue of Teda, Tianjin, PR China, 300457., 2007, 125, 281-285
article (Wedel1990)
Wedel, A.; Weiss, D. S.; Popham, D.; Dröge, P. & Kustu, S.
A bacterial enhancer functions to tether a transcriptional activator near a promoter.
Science,
Department of Plant Pathology, University of California, Berkeley 94720., 1990, 248, 486-490
article (Weissenborn1992)
Weissenborn, D. L.; Wittekindt, N. & Larson, T. J.
Structure and regulation of the glpFK operon encoding glycerol diffusion facilitator and glycerol kinase of Escherichia coli K-12.
J Biol Chem,
Department of Biochemistry and Nutrition, Virginia Polytechnic Institute and State University, Blacksburg 24061-0308., 1992, 267, 6122-6131
article (Weissenborn1992a)
Weissenborn, D. L.; Wittekindt, N. & Larson, T. J.
Structure and regulation of the glpFK operon encoding glycerol diffusion facilitator and glycerol kinase of Escherichia coli K-12.
J Biol Chem,
Department of Biochemistry and Nutrition, Virginia Polytechnic Institute and State University, Blacksburg 24061-0308., 1992, 267, 6122-6131
misc (Wikipedia)
Wikipedia
Microscope à force atomique
article (Winder1998)
Winder, D. G.; Mansuy, I. M.; Osman, M.; Moallem, T. M. & Kandel, E. R.
Genetic and pharmacological evidence for a novel, intermediate phase of long-term potentiation suppressed by calcineurin.
Cell,
1998, 92, 25-37
article (Wolf2003)
Wolf, D. M. & Arkin, A. P.
Motifs, modules and games in bacteria.
Curr Opin Microbiol,
2003, 6, 125-134
article (Xiong2003)
Xiong, W. & Ferrell, J. E.
A positive-feedback-based bistable 'memory module' that governs a cell fate decision.
Nature,
2003, 426, 460-465
article (Yamamoto2003)
Yamamoto, K. & Ishihama, A.
Two different modes of transcription repression of the Escherichia coli acetate operon by IclR.
Mol Microbiol,
Department of Molecular Genetics, National Institute of Genetics, Mishima, Shizuoka 411-8504, Japan., 2003, 47, 183-194
article (Yang1997)
Yang, B.; Gerhardt, S. G. & Larson, T. J.
Action at a distance for glp repressor control of glpTQ transcription in Escherichia coli K-12.
Mol Microbiol,
Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg 24061-0308, USA., 1997, 24, 511-521
article (Yang1996)
Yang, B. & Larson, T. J.
Action at a distance for negative control of transcription of the glpD gene encoding sn-glycerol 3-phosphate dehydrogenase of Escherichia coli K-12.
J Bacteriol,
Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg 24061-0308, USA., 1996, 178, 7090-7098
article (Yang1988)
Yang, Y. & Ames, G. F.
DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences.
Proc Natl Acad Sci U S A,
Department of Biochemistry, University of California, Berkeley 94720., 1988, 85, 8850-8854
article (Yao2006)
Yao, Y.; Martinez-Yamout, M. A.; Dickerson, T. J.; Brogan, A. P.; Wright, P. E. & Dyson, H. J.
Structure of the Escherichia coli quorum sensing protein SdiA: activation of the folding switch by acyl homoserine lactones.
J Mol Biol,
Department of Molecular Biology and the Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA., 2006, 355, 262-273
article (Yin1994)
Yin, H.; Landick, R. & Gelles, J.
Tethered particle motion method for studying transcript elongation by a single RNA polymerase molecule.
Biophys J,
Department of Biochemistry, Brandeis University, Waltham, Massachusetts 02254., 1994, 67, 2468-2478
article (Yin1995)
Yin, J. C.; Vecchio, M. D.; Zhou, H. & Tully, T.
CREB as a memory modulator: induced expression of a dCREB2 activator isoform enhances long-term memory in Drosophila.
Cell,
1995, 81, 107-115
article (Yu2006)
Yu, J.; Xiao, J.; Ren, X.; Lao, K. & Xie, X. S.
Probing gene expression in live cells, one protein molecule at a time.
Science,
2006, 311, 1600-1603
article (Zhang2006)
Zhang, Y.; McEwen, A. E.; Crothers, D. M. & Levene, S. D.
Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.
PLoS One,
Department of Chemistry, Yale University, New Haven, Connecticut, United States of America. ylzhang@lbl.gov, 2006, 1, e136
article (Zhu2007)
Zhu, C.; Zheng, Y. & Jia, Y.
A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations.
Biophys Chem,
2007, 129, 49-55
article (Zurla2009)
Zurla, C.; Manzo, C.; Dunlap, D.; Lewis, D. E. A.; Adhya, S. & Finzi, L.
Direct demonstration and quantification of long-range DNA looping by the lambda bacteriophage repressor.
Nucleic Acids Res,
Physics Department, Emory University, Atlanta, GA 30322, USA., 2009, 37, 2789-2795



"Bacterial polyhydroxyalkanoate granules: biogenesis, structure, and potential use as nano-/micro-beads in biotechnological and biomedical applications." Grage K., Jahns A. C., Parlane N., Palanisamy R., Rasiah I. A., Atwood J. A. and Rehm B. H. A. 2009. Biomacromolecules 10, 660-669.

<b/> Modelling </b>


<p style="text-indent: 30px; text-align:justify;">“Recombinant Escherichia coli produces tailor-made biopolyester granules for applications in fluorescence activated cell sorting: functional display of the mouse interleukin-2 and myelin oligodendrocyte glycoprotein”, Thomas Bäckström, Jane A Brockelbank and Bernd HA Rehm. January 2007.BMC Biotechnology.

<p style="text-indent: 30px; text-align:justify;">“Polyhydroxyalkanoate Granules Are Complex Subcellular Organelles (Carbonosomes)” , Dieter Jendrossek ,May 2009, Journal Of Bacteriology,p. 3195–3202 .

<p style="text-indent: 30px; text-align:justify;">“Polyhydroxyalkanoate (PHA) homeostasis: the role of the PHA synthase” JoAnne Stubbe and Jiamin Tian, 2003, Nat. Prod. Rep.,20, 445–457.




<p style="text-indent: 30px; text-align:justify;"> <A NAME="et1" style="text-decoration:none">"Novel and economical purification of recombinant proteins: Intein-mediated protein purification using in vivo polyhydroxybutyrate (PHB)matrix association", Mahmoud Reza Banki, Tillman U.Gerngross and David W. Wood, 2005, Protein Science, 14:1387–1395 </A>

</div>

 -moz-border-radius: 15px;
 -webkit-border-radius: 15px;
 border-radius: 15px;"> 

<a id="csb" href="http://fondation.insa-lyon.fr/"><img style="width: 120px; height: 60px; margin: 10px; padding-top: 15px; padding-bottom: 15px" src="Team_INSA-Lyon_logo_fondationINSA.jpg"/></a>

<a id="csb" href="http://www.biomerieux.fr/"><img style="width: 120px; height: 90px; margin: 10px" src="logo_home.png"/></a>


<a id="csb" href="http://www.insa-lyon.fr/en"><img style="width: 120px; height: 64.2px; margin: 15px; padding-top: 10px; padding-bottom: 10px" src="Team_INSA-Lyon_logo_Insa.png" /></a>


</html>