Team:Stockholm/29 September 2010
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Andreas
Sequencing results
Sequencing results from 27/9 samples arrived and were analyzed by nucleotide BLAST.
Construct | Sequencing result | Blastn result | Comment |
---|---|---|---|
pEX.N-TAT⋅SOD⋅His 3 | pEX.nTAT.SOD.his 3_premix | Blastn | Verified. Three silent mutations in His tag; does not alter a.a. sequence. |
pEX.N-TAT⋅SOD⋅His 4 | pEX.nTAT.SOD.his 4_premix | Blastn | Not verified. Incorrect sequence. |
pSB1A2.RBS.yCCS 3 | pSB1A2.RBS.yCCS 3_premix | Blastn | Partly verified. Three mutations found: (1) Single base deletion in yCCS sequence, causing frame shift; (2) Insertion between SpeI and PstI, not affecting expression of cloning; (3) Point mutation in PstI site, disabling PstI restriction. |
pSB1A2.RBS.yCCS 4 | VF2 | pA.RBS.yCCS4_VF2 | |
pSB1K3.N-TAT⋅SOD⋅His 4 | VF2 | pK.nTAT*SH4_VF2 | |
pSB1K3.N-TAT⋅SOD⋅His 5 | VF2 | pK.nTAT*SH5_VF2 | |
pSB1K3.N-Tra10⋅SOD⋅His 5 | VF2 | pK.nTra10*SH5_VF2 | |
pSB1K3.N-LMWP⋅SOD⋅His 1 | VF2 | pK.nLMWP*SH1_VF2 | |
pSB1C3.N-LMWP⋅SOD⋅His 1 | VF2 | pC.nLMWP*SH1_VF2 | |
pSB1C3.N-LMWP⋅SOD⋅His 4 | VF2 | pC.nLMWP*SH4_VF2 | |
pEX.SOD | pEX.SOD_premix | Blastn | Verified. Insertion found between SpeI and PstI; does not affect expression. |
pEX.yCCS 5 | pEX.yCCS 5_premix | Blastn | Verified. Insertion found between SpeI and PstI; does not affect expression. |
pEX.SOD⋅His | pEX.SOD.his_premix | Blastn | Verified. Three silent mutations in His tag; does not alter a.a. sequence. |
pEX.His⋅SOD | pEX.his.SOD_premix | Blastn | Verified. Three silent mutations in His tag; does not alter a.a. sequence. |