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Revision as of 09:22, 5 August 2010 by
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Single chain antibody structural alignment
Protocol
Data source
Single chain antibody synthesis
Structure Prediction
Structure Alignment
Result
Structural alignment results of single chain antibodies with FGF binding domain
Name
Core Residues
Core RMSD
Raw Score
P-value
2VXT
95
2.676
84.306
0.000222
2VXU
98
2.563
92.118
0.0000823
2VXV
77
2.64
52.269
0.0644
2ZKH
96
2.855
93.411
0.001
3AAZ
84
4.197
68.078
0.0642
3D69
137
12.224
98.134
0.00541
3EO9
80
2.282
84.665
0.00295
3EOA
116
10.402
98.544
0.0547
3EOB
68
4.685
56.357
0.3753
3EYV
85
4.704
66.669
0.1653
3FMG
81
2.629
73.298
0.0129
3FOG
90
7.243
74.031
0.0785
3G6D
72
4.403
69.774
0.1281
3GBM
119
10.331
115.929
0.0314
3GBN
77
2.788
57.204
0.0592
3GHB
101
12.861
81.189
0.3984
3GHE
96
3.302
109.208
0.00117
3GI8
127
6.837
113.467
0.00038
3GI9
52
3.534
43.56
0.166
3GIZ
89
8.217
68.702
0.3172
3GK8
91
6.84
84.048
0.00811
3GKW
74
3.205
47.096
0.1215
3GNM
135
4.739
103.812
0.00000297
3GO1
103
8.842
77.631
0.2587
3GRW
107
9.819
108.405
0.0449
3H42
69
4.389
59.165
0.3421
3HC0
67
3.065
40.982
0.1028
3HC3
67
3.173
49.109
0.0944
3HC4
36
1.998
42.538
0.206
3HI5
77
3.222
58.096
0.1832
3HI6
81
3.646
63.526
0.0394
3HMW
83
4.159
62.598
0.1976
3HMX
70
5.215
62.814
0.2228
3HNT
84
2.62
74.666
0.00118
3HNV
84
2.998
77.17
0.00374
3HR5
78
4.158
58.026
0.2978
3I50
65
2.206
52.252
0.1156
3I9G
84
5.026
64.155
0.1506
3IU3
75
3.192
56.006
0.2552
3IXT
78
2.951
68.627
0.0378
3KDM
87
4.273
65.722
0.1683
3KS0
81
3.039
55.562
0.0192
3KYK
88
4.728
68.681
0.1016
3KYM
85
6.52
66.102
0.5135
3L1O
93
2.545
85.909
0.0014
3L5W
89
4.925
72.178
0.0637
3L5X
88
4.796
65.262
0.1111
3L5Y
64
4.689
65.227
0.2007
3L95
73
5.105
70.312
0.0515
3LMJ
76
2.699
56.627
0.0237
3LQA
75
8.371
58.374
0.8315
3LS4
79
2.458
72.68
0.00694
3LS5
81
2.443
73.043
0.0014
3LZF
96
2.468
93.292
0.00155
3MLR
71
2.574
64.979
0.0165
3MLS
75
2.534
57.386
0.0202
3MLU
127
10.025
73.766
0.0305
3MLV
75
2.454
62.321
0.0218
3MLW
83
8.94
59.029
0.4846
3MLX
118
11.485
105.391
0.0961
3MLY
84
4.704
63.962
0.1023
3MLZ
82
3.995
64.563
0.123
3MUG
79
2.827
68.72
0.0223
3MXV
125
10.857
121.911
0.01
3MXW
102
11.262
78.348
0.4213
AntiTB
86
2.139
89.893
0.00443
Structural alignment results of random short proteins with FGF binding domain