From 2010.igem.org
- The notebook is organized into weeks. Click on the Saturday of each week to view that week's notebook entry
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_May_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_May_2010&action=edit 2]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_May_2010&action=edit 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_May_2010&action=edit 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_May_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_May_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_May_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_May_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_May_2010&action=edit 9]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_May_2010&action=edit 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_May_2010&action=edit 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_May_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_May_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_May_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_May_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_May_2010&action=edit 16]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_May_2010&action=edit 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_May_2010&action=edit 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_May_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_May_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_May_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_May_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_May_2010&action=edit 23]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_May_2010&action=edit 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_May_2010&action=edit 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_May_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_May_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_May_2010&action=edit 28]
| [http://2010.igem.org/UIUC-Illinois-Software/29_May_2010 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_May_2010&action=edit 30]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/31_May_2010&action=edit 31]
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| June
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_June_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_June_2010&action=edit 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_June_2010&action=edit 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_June_2010&action=edit 4]
| [http://2010.igem.org/UIUC-Illinois-Software/5_June_2010 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_June_2010&action=edit 6]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_June_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_June_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_June_2010&action=edit 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_June_2010&action=edit 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_June_2010&action=edit 11]
| [http://2010.igem.org/UIUC-Illinois-Software/12_June_2010 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_June_2010&action=edit 13]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_June_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_June_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_June_2010&action=edit 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_June_2010&action=edit 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_June_2010&action=edit 18]
| [http://2010.igem.org/UIUC-Illinois-Software/19_June_2010 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_June_2010&action=edit 20]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_June_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_June_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_June_2010&action=edit 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_June_2010&action=edit 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_June_2010&action=edit 25]
| [http://2010.igem.org/UIUC-Illinois-Software/26_June_2010 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_June_2010&action=edit 27]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_June_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_June_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_June_2010&action=edit 30]
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| July
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_July_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_July_2010&action=edit 2]
| [http://2010.igem.org/UIUC-Illinois-Software/3_July_2010 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_July_2010&action=edit 4]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_July_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_July_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_July_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_July_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_July_2010&action=edit 9]
| [http://2010.igem.org/UIUC-Illinois-Software/10_July_2010 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_July_2010&action=edit 11]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_July_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_July_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_July_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_July_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_July_2010&action=edit 16]
| [http://2010.igem.org/UIUC-Illinois-Software/17_July_2010 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_July_2010&action=edit 18]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_July_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_July_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_July_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_July_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_July_2010&action=edit 23]
| [http://2010.igem.org/UIUC-Illinois-Software/24_July_2010 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_July_2010&action=edit 25]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_July_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_July_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_July_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_July_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_July_2010&action=edit 30]
| [http://2010.igem.org/UIUC-Illinois-Software/31_July_2010 31]
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| August
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_August_2010&action=edit 1]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_August_2010&action=edit 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_August_2010&action=edit 3]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_August_2010&action=edit 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_August_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_August_2010&action=edit 6]
| [http://2010.igem.org/UIUC-Illinois-Software/7_August_2010 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_August_2010&action=edit 8]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_August_2010&action=edit 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_August_2010&action=edit 10]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_August_2010&action=edit 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_August_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_August_2010&action=edit 13]
| [http://2010.igem.org/UIUC-Illinois-Software/14_August_2010 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_August_2010&action=edit 15]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_August_2010&action=edit 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_August_2010&action=edit 17]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_August_2010&action=edit 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_August_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_August_2010&action=edit 20]
| [http://2010.igem.org/UIUC-Illinois-Software/21_August_2010 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_August_2010&action=edit 22]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_August_2010&action=edit 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_August_2010&action=edit 24]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_August_2010&action=edit 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_August_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_August_2010&action=edit 27]
| [http://2010.igem.org/UIUC-Illinois-Software/28_August_2010 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_August_2010&action=edit 29]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_August_2010&action=edit 30]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/31_August_2010&action=edit 31]
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| September
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_September_2010&action=edit 1]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/2_September_2010&action=edit 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_September_2010&action=edit 3]
| [http://2010.igem.org/UIUC-Illinois-Software/4_September_2010 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_September_2010&action=edit 5]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_September_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_September_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_September_2010&action=edit 8]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/9_September_2010&action=edit 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_September_2010&action=edit 10]
| [http://2010.igem.org/UIUC-Illinois-Software/11_September_2010 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_September_2010&action=edit 12]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_September_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_September_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_September_2010&action=edit 15]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/16_September_2010&action=edit 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_September_2010&action=edit 17]
| [http://2010.igem.org/UIUC-Illinois-Software/18_September_2010 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_September_2010&action=edit 19]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_September_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_September_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_September_2010&action=edit 22]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/23_September_2010&action=edit 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_September_2010&action=edit 24]
| [http://2010.igem.org/UIUC-Illinois-Software/25_September_2010 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_September_2010&action=edit 26]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_September_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_September_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_September_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_September_2010&action=edit 30]
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| October
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/1_October_2010&action=edit 1]
| [http://2010.igem.org/UIUC-Illinois-Software/2_October_2010 2]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/3_October_2010&action=edit 3]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/4_October_2010&action=edit 4]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/5_October_2010&action=edit 5]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/6_October_2010&action=edit 6]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/7_October_2010&action=edit 7]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/8_October_2010&action=edit 8]
| [http://2010.igem.org/UIUC-Illinois-Software/9_October_2010 9]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/10_October_2010&action=edit 10]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/11_October_2010&action=edit 11]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/12_October_2010&action=edit 12]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/13_October_2010&action=edit 13]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/14_October_2010&action=edit 14]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/15_October_2010&action=edit 15]
| [http://2010.igem.org/UIUC-Illinois-Software/16_October_2010 16]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/17_October_2010&action=edit 17]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/18_October_2010&action=edit 18]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/19_October_2010&action=edit 19]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/20_October_2010&action=edit 20]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/21_October_2010&action=edit 21]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/22_October_2010&action=edit 22]
| [http://2010.igem.org/UIUC-Illinois-Software/23_October_2010 23]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/24_October_2010&action=edit 24]
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| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/25_October_2010&action=edit 25]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/26_October_2010&action=edit 26]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/27_October_2010&action=edit 27]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/28_October_2010&action=edit 28]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/29_October_2010&action=edit 29]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/30_October_2010&action=edit 30]
| [http://2010.igem.org/wiki/index.php?title=UIUC-Illinois-Software/31_October_2010&action=edit 31]
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Weekly Lab Notebook
May 23 – May 29
Colin - At the beginning of the week, we hosted the iGEM regional convention, and we were able to meet other iGEM teams from around the Americas. It was very interesting to get to know other teams that we would be competing against this summer, and the convention went significantly better than expected.
Boot camp was also this week since it is the first week of the summer and the first week of full time iGEM. Everyone worked together to learn basic web programming with django, using a helpful, but long django tutorial. In between self-taught django lessons, we all took a look at last year's code for IMPtools to get an understanding of their previous work. Once we began to get a feel for the task ahead of us, we split the group into two, designating the task of improving IMPtools to one group, and coding the new project, the strain designer, in the other group. It seems that we have a long summer ahead of us.
Bobak - Migrating/Extracting imptools v1 code from Professor Bhalerao's server
Setting up team development environment
Setting up SVN
Started BioMORTAR (strain designer step) development
Anna – We split up research and learned about ways to model cellular logic design, which would
be a way to compute things within a cell, another area was metabolic pathways. We also looked
up information about projects that were done by last year’s iGEM groups. The goal of the research
was to be able to come up with a project idea. We read about and discussed aspects of metabolic
pathway modeling. This entailed discussing Matlab’s Constraint-based reconstruction and analysis
(COBRA) designed by Becker, et. Al. The components of COBRA are that it creates a flux balance analysis
of a genome-scale metabolic reconstruction and models how a cell will growth based on different
constraints. These constratins can be environmental or genetic manipulation.
Jeremy - I spent the first few days of this week reading the django tutorial, and most of the rest of this week integrating the RPAIR database into Imptools, partially because it needed to be done, but also because it allowed me to familiarize myself with the internal structure of Imptools. I also installed the necessary software to do dev work, including mysql, scipy, numpy, and biopython. Making mysql work with python through mysqldb was particularly frustrating, to the point where I considered dual-booting Ubuntu just to make setup easier.
"
