Team:TU Delft/Project/references
From 2010.igem.org
References
Alkane degradation
- Fujii, T., Narikawa, T., Takeda, K., Kato, J., Biotransformation of various alkanes using the Escherichia coli expressing an alkane hydroxylase system from Gordonia sp. TF6. Bioscience, biotechnology, and biochemistry, 68(10) 2171-2177 (2004)
- Liu Li, Xueqian Liu, Wen Yang, Feng Xu, Wei Wang, Lu Feng, Mark Bartlam, Lei Wang and Zihe Rao. Crystal Structure of Long-Chain Alkane Monooxygenase (LadA) in Complex with Coenzyme FMN: Unveiling the Long-Chain Alkane Hydroxylase. Journal of molecular biology, 376: 453–465 (2008)
- Tomohisa Kato, Asuka Miyanaga, Mitsuru Haruki, Tadayuki Imanaka, Masaaki Morikawa & Shigenori Kanaya. Gene Cloning of an Alcohol Dehydrogenase from Thermophilic Alkane-Degrading Bacillus thermoleovorans B23. Journal of Bioscience and Bioengineering 91(1):100-102 (2001)
- Sulzenbacher, G., et al., Crystal structure of E-coli alcohol dehydrogenase YqhD: Evidence of a covalently modified NADP coenzyme. Journal of Molecular Biology 342(2):489-502 (2004)
- http://mbel.kaist.ac.kr/lab/research/protein_en1.html
- Hoffmann F. and Rinas U. "Stress Induced by Recombinant Protein Production in Escherichia coli" Advances in Biochemical Engineering/Biotechnology, 2004, Vol. 89/2004, pp. 73-92.
Sensing
- Canosa, I., J. M. Sanchez-Romero, et al. A positive feedback mechanism controls expression of AlkS, the transcriptional regulator of the Pseudomonas oleovorans alkane degradation pathway. Molecular Microbiology 35(4): 791-799 (2000)
- Moreno, R., A. Ruiz-Manzano, et al. The Pseudomonas putida Crc global regulator is an RNA binding protein that inhibits translation of the AlkS transcriptional regulator. Molecular Microbiology 64(3): 665-675 (2007)
- van Beilen, J. B., S. Panke, et al. Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology-Sgm 147: 1621-1630 (2001)
- Rojo, F. (2009), Degradation of alkanes by bacteria. Environmental Microbiology, 11: 2477–2490. doi: 10.1111/j.1462-2920.2009.01948.x
- Kotte, O, Zaugg, J., Heinemann, M., Bacterial adaptation through distributed sensing of metabolic fluxes, Molecular Systems Biology, 6:355, 2010 doi:10.1038/msb.2010.10
- Kremling, A., Bettenbrock, K., Gilles, E.D., Analysis of global control of Escherichia coli carbohydrate uptake, BMC Systems Biology, 1:42, 2007 doi:10.1186/1752-0509-1-42
- Lin, H. Y., Mathiszik, B., Xu, B., Enfors, S.-O., Neubauer, P., Determination of the Maximum Specific Uptake Capacities for Glucose and Oxygen in Glucose-Limited Fed-Batch Cultivations of Escherichia coli, Biotechnology and Bioengineering, 73, 347-357, 2001
- Alon, U. (ed.), An Introduction to Systems Biology: Design Principles of Biological Circuits, CRC Press, 2007
Survival
- S. Tanaka,K. Ikeda, H. Miyasaka, Enhanced Tolerance Against Salt-Stress and Freezing-Stress of Escherichia coli Cells Expressing Algal bbc1 Gene. Current Microbiology, 42:173-177 (2001)
- Y. Suda,T. Yoshikawa,Y. Okuda,M. Tsunemoto,S. Tanaka,K. Ikeda,H. Miyasaka,M. Watanabe,K. Sasaki,K. Harada,T. Bamba,K. Hirata, Isolation and characterization of a novel antistress gene from Chlamydomonas sp. W80. Journal of Bioscience and Bioengineering, 107(4) 352-354 (2009)
- Y. Hase, S. Yokoyama, A. Muto, et al. , Removal of a ribosome small subunit-dependent GTPase confers salt resistance on Escherichia coli cells. RNA Society, 15:1766-1774 (2009)
- Mihaela Marilena Lăzăroaie,Investigation of saturated and aromatichydrocarbon resistance mechanismsin Pseudomonas aeruginosa IBB Cent. Eur. J. Biol. 4(4) 469–481 (2009)
- M. Okochi, K. Kanie, M. Kurimoto ,M. Yohda & Hiroyuki Honda Overexpression of prefoldin from the hyperthermophilic archaeum Pyrococcus horikoshii OT3 endowed Escherichia coli with organic solvent tolerance Appl Microbiol Biotechnol 79:443–449 (2008)
Solubility
- Walzer, G., Rosenberg, E. and Ron, E.Z. (2006) The Acinetobacter outer membrane protein A (OmpA) is a secreted emulsifier. Environmental Microbiology. 8:1026-1032.
- Toren, A., Segal, G., Ron, E.Z. and Rosenberg, E. (2002) Structure--function studies of the recombinant protein bioemulsifier AlnA. Environmental Microbiology. 4:257-261.
- Navon-Venezia, S., et al. (1995) Alasan, a new bioemulsifier from Acinetobacter radioresistens. Applied and Environmental Microbiology. 61:3240-3244.
- Toren, A., Orr, E., Paitan, Y., Ron, E.Z. and Rosenberg, E. (2002) The active component of the bioemulsifier alasan from Acinetobacter radioresistens KA53 is an OmpA-like protein. The Journal of Bacteriology. 184:165-170.
- Toren, A., Navon-Venezia, S., Ron, E.Z. and Rosenberg, E. (2001) Emulsifying activities of purified Alasan proteins from Acinetobacter radioresistens KA53. Applied and Environmental Microbiology. 67:1102-1106.
- Ron, E.Z. and Rosenberg, E. (2002) Biosurfactants and oil bioremediation. Current Opinion in Biotechnology. 13:249-252.
- Suresh Kumar, A., Mody, K. and Jha, B. (2007) Evaluation of biosurfactant/bioemulsifier production by a marine bacterium. Bulletin of Environmental Contamination and Toxicology. 79:617-621.