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From 2010.igem.org

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This section will be removed before wiki-freeze!

DO NOT EDIT NOW!!!

General remarks

• Protein names: normally written
• gene names: italic
• Directed movement NOT running, please correct!
• chemotaxis pathway NOT Chemotaxis nor chemotactic
• E. lemming with space
  • E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified E. coli
• far-red light, not far red light, please correct!
• internal links - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
• in silico & in vivo, not in-silico & in-vivo

Teaser & Animations

Responsibilities

Introduction

• https://2010.igem.org/Team:ETHZ_Basel
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• https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
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• https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
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• https://2010.igem.org/Team:ETHZ_Basel/Introduction/Media
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Biology & Wet Laboratory

• https://2010.igem.org/Team:ETHZ_Basel/Biology
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• https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism
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• https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning
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• https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
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• https://2010.igem.org/Team:ETHZ_Basel/Biology/Archeal_Light_Receptor
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• https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety
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Mathematical Modeling

• https://2010.igem.org/Team:ETHZ_Basel/Modeling
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• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
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• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
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• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
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• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
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Information Processing

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
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• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope
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• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
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• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
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• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
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• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller
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• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game
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Achievements

• https://2010.igem.org/Team:ETHZ_Basel/Achievements
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• https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox
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• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox
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• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Design
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• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Implementation
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• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Technical_Standard
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Team

• https://2010.igem.org/Team:ETHZ_Basel/Team
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• https://2010.igem.org/Team:ETHZ_Basel/Team/Photos
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• https://2010.igem.org/Team:ETHZ_Basel/Team/Acknowledgements
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Suggestions

• https://2010.igem.org/Team:ETHZ_Basel/Biology: Elsa

first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
second paragraph: quite unclear, if possible, add more details & explain more
add a few sentences (and link them) regarding ARL & Safety

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing

50 μm (?) high flow channel; remove question mark

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow

in second part of the page, 'cells with highest score'; define the score
clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch

Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation

added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization

spacing, subheadings & some bullet points); suggesting more images for the user experience part

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection

Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria

check with biology to keep it updated (check list)

• https://2010.igem.org/Team:ETHZ_Basel/Team

Add link to Biozentrum Unibas.

Christoph will do this by Sunday

• https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading Simona DONE

Christoph:

• first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid

• too many "in order to"

• mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more

• Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!

• Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined#Light_switch_-_Chemotaxis : interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
• "To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading Simona DONE

C: give an idea about the complexity, e.g. high number of proteins and interactions; why did we use only Spiro and Mello?; models: text first as it explains the plots; please gibe a clearer description of the plots, for an external person it's almost not understandable

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
• make clear we did this completely on our own, not implemented but created!; Great section!!! 'THANKS!!!
• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined C: see above
• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design C: OK