Team:Stockholm/20 September 2010

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Contents

Andreas

Assembly of new parts

  1. pSB1K3.N-LMWP⋅SOD⋅His
    • Dig pSB1C3.N-LMWP (E+A)
    • Dig pMA.SOD⋅His (N+P)
    • Dig pSB1K3.RFP (E+P)
  2. pSB1C3.N-LMWP⋅SOD⋅His
    • Dig pSB1C3.N-LMWP (A+S)
    • Dig pMA.SOD⋅His (N+S)

Digestions

  pSB1C3. N-LMWP pMA. SOD⋅His pSB1C3. N-LMWP pSB1K3. N-TAT⋅SOD⋅ His 4
10X FastDigest buffer 3 3 3 2
dH2O 15.2 4.1 15.2 11.4
DNA (1 μg) 9.8 20.9 9.8 4.6
AgeI 1 0 1 0
NgoMIV 0 1 0 0
FD SpeI 1 1 0 0
FD EcoRI 0 0 1 0
FD PstI 0 0 0 1
FD XbaI 0 0 0 1
  30 μl 30 μl 30 μl 20 μl
  • Incubation: 37 °C, 2:00 (NgoMIV & AgeI); 0:30 (FD)
  • Inactivation: 80 °C, 20 min

Gel verification

1.5 % agarose, 120 V

Expected bands

  • Dig pSB1C3.N-LMWP A+S 20/9: 2118 bp, (14 bp)
  • Dig pMA.SOD⋅His N+S 20/9: 2416 bp, 503 bp
  • Dig pSB1C3.N-LMWP E+A 20/9: 2063 bp, 69 bp
  • Dig pSB1K3.N-TAT⋅SOD⋅His 4 X+P 20/9: ≈2200 bp, 558 bp

Results

Ligations

  • [Dig pSB1K3.RFP E+P 14/9] = 66.6 ng/μl
  • [Dig pMA.His⋅SOD E+A 14/9] = 66.6 ng/μl
  • [Dig pSB1C3.C-TAT N+P 15/9] = 66.6 ng/μl
  • [Dig pSB1C3.N-LMWP A+S 20/9] = 33.3 ng/μl
  • [Dig pMA.SOD⋅His N+S 20/9] = 33.3 ng/μl
  • [Dig pSB1C3.N-LMWP E+A 20/9] = 33.3 ng/μl
  • [Dig pSB1K3.N-TAT⋅SOD⋅His 4 X+P 20/9] = 33.3 ng/μl
  pSB1C3. N-LMWP⋅SH pSB1K3. N-LMWP⋅SH pSB1A2. RBS.yCCS pEX. N-TAT⋅SH
10X T4 Ligase buffer 2 2 2 2
dH2O 9 0 11 11
Vector DNA 2 1.5 1.5 1.5
Insert 1 DNA 6 4.5 4.5 4.5
Insert 2 DNA – 11 – –
T4 DNA ligase 1 1 1 1
  20 μl 20 μl 20 μl 20 μl
  • Incubation: 22 °C, 15 min

Transformations

Standard transformations, procedures according to protocol.

  • 1 μl ligation mix
    • Lig pSB1C3.N-LMWP⋅SH (Cm 25)
    • Lig pSB1K3.N-LMWP⋅SH (Km 50)
    • Lig pSB1A2.RBS.yCCS (Amp 100)
    • Lig pEX.N-TAT⋅SH (Amp 100 + 50 μl 0.1 mM IPTG)




Mimmi

his.SOD.cTAT

Gel

well sample
1 ladder
2 pSB1C3.his.SOD.cTAT 1
3 pSB1C3.his.SOD.cTAT 2
4 pSB1C3.his.SOD.cTAT 3
5 pSB1C3.his.SOD.cTAT 4
6 pSB1C3.his.SOD.cTAT 5
7 pSB1C3.his.SOD.cTAT 6
8 pSB1C3.his.SOD
9 pEX.SOD



PhastGel

well sample
Place for picture.jpg
1 SOD.his 0h
2 SOD.his 2h 1:1.5
3 his.SOD 0h
4 his.SOD 2h 1:2
5 yCCS 1 2h 1:2
6 ladder


pEX.SOD.his

Gel

2010-09-20 pEX.SOD.jpg
well sample
1 ladder
2 pEX.SOD.his
3 pEX.his.SOD
4 yCCS 1
5 yCCS 2
  • Very weak bands, and in the wrong size...
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