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Team:KAIST-Korea/Project/Modeling
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Revision as of 09:22, 5 August 2010 by Luftschloss (Talk | contribs)
Single chain antibody structural alignment
Protocol
Data source
Single chain antibody synthesis
Structure Prediction
Structure Alignment
Result
Structural alignment results of single chain antibodies with FGF binding domain
| Name | Core Residues | Core RMSD | Raw Score | P-value |
|---|---|---|---|---|
| 2VXT | 95 | 2.676 | 84.306 | 0.000222 |
| 2VXU | 98 | 2.563 | 92.118 | 0.0000823 |
| 2VXV | 77 | 2.64 | 52.269 | 0.0644 |
| 2ZKH | 96 | 2.855 | 93.411 | 0.001 |
| 3AAZ | 84 | 4.197 | 68.078 | 0.0642 |
| 3D69 | 137 | 12.224 | 98.134 | 0.00541 |
| 3EO9 | 80 | 2.282 | 84.665 | 0.00295 |
| 3EOA | 116 | 10.402 | 98.544 | 0.0547 |
| 3EOB | 68 | 4.685 | 56.357 | 0.3753 |
| 3EYV | 85 | 4.704 | 66.669 | 0.1653 |
| 3FMG | 81 | 2.629 | 73.298 | 0.0129 |
| 3FOG | 90 | 7.243 | 74.031 | 0.0785 |
| 3G6D | 72 | 4.403 | 69.774 | 0.1281 |
| 3GBM | 119 | 10.331 | 115.929 | 0.0314 |
| 3GBN | 77 | 2.788 | 57.204 | 0.0592 |
| 3GHB | 101 | 12.861 | 81.189 | 0.3984 |
| 3GHE | 96 | 3.302 | 109.208 | 0.00117 |
| 3GI8 | 127 | 6.837 | 113.467 | 0.00038 |
| 3GI9 | 52 | 3.534 | 43.56 | 0.166 |
| 3GIZ | 89 | 8.217 | 68.702 | 0.3172 |
| 3GK8 | 91 | 6.84 | 84.048 | 0.00811 |
| 3GKW | 74 | 3.205 | 47.096 | 0.1215 |
| 3GNM | 135 | 4.739 | 103.812 | 0.00000297 |
| 3GO1 | 103 | 8.842 | 77.631 | 0.2587 |
| 3GRW | 107 | 9.819 | 108.405 | 0.0449 |
| 3H42 | 69 | 4.389 | 59.165 | 0.3421 |
| 3HC0 | 67 | 3.065 | 40.982 | 0.1028 |
| 3HC3 | 67 | 3.173 | 49.109 | 0.0944 |
| 3HC4 | 36 | 1.998 | 42.538 | 0.206 |
| 3HI5 | 77 | 3.222 | 58.096 | 0.1832 |
| 3HI6 | 81 | 3.646 | 63.526 | 0.0394 |
| 3HMW | 83 | 4.159 | 62.598 | 0.1976 |
| 3HMX | 70 | 5.215 | 62.814 | 0.2228 |
| 3HNT | 84 | 2.62 | 74.666 | 0.00118 |
| 3HNV | 84 | 2.998 | 77.17 | 0.00374 |
| 3HR5 | 78 | 4.158 | 58.026 | 0.2978 |
| 3I50 | 65 | 2.206 | 52.252 | 0.1156 |
| 3I9G | 84 | 5.026 | 64.155 | 0.1506 |
| 3IU3 | 75 | 3.192 | 56.006 | 0.2552 |
| 3IXT | 78 | 2.951 | 68.627 | 0.0378 |
| 3KDM | 87 | 4.273 | 65.722 | 0.1683 |
| 3KS0 | 81 | 3.039 | 55.562 | 0.0192 |
| 3KYK | 88 | 4.728 | 68.681 | 0.1016 |
| 3KYM | 85 | 6.52 | 66.102 | 0.5135 |
| 3L1O | 93 | 2.545 | 85.909 | 0.0014 |
| 3L5W | 89 | 4.925 | 72.178 | 0.0637 |
| 3L5X | 88 | 4.796 | 65.262 | 0.1111 |
| 3L5Y | 64 | 4.689 | 65.227 | 0.2007 |
| 3L95 | 73 | 5.105 | 70.312 | 0.0515 |
| 3LMJ | 76 | 2.699 | 56.627 | 0.0237 |
| 3LQA | 75 | 8.371 | 58.374 | 0.8315 |
| 3LS4 | 79 | 2.458 | 72.68 | 0.00694 |
| 3LS5 | 81 | 2.443 | 73.043 | 0.0014 |
| 3LZF | 96 | 2.468 | 93.292 | 0.00155 |
| 3MLR | 71 | 2.574 | 64.979 | 0.0165 |
| 3MLS | 75 | 2.534 | 57.386 | 0.0202 |
| 3MLU | 127 | 10.025 | 73.766 | 0.0305 |
| 3MLV | 75 | 2.454 | 62.321 | 0.0218 |
| 3MLW | 83 | 8.94 | 59.029 | 0.4846 |
| 3MLX | 118 | 11.485 | 105.391 | 0.0961 |
| 3MLY | 84 | 4.704 | 63.962 | 0.1023 |
| 3MLZ | 82 | 3.995 | 64.563 | 0.123 |
| 3MUG | 79 | 2.827 | 68.72 | 0.0223 |
| 3MXV | 125 | 10.857 | 121.911 | 0.01 |
| 3MXW | 102 | 11.262 | 78.348 | 0.4213 |
| AntiTB | 86 | 2.139 | 89.893 | 0.00443 |
