Team:Edinburgh/Bacterial/References

• home
• team - illuminati
  • official
  • supervisors
  • advisors
  • students
  • environment
  • gallery
• genomic BRIDGEs
  • the protocol
  • submitted parts
  • results
  • future work
  • references
• bacterial BRIDGEs
  • the repressilator
  • red light
  • red sensor
  • blue light
  • blue sensor
  • green light
  • green sensor
  • submitted parts
  • results
  • future work
  • references
• modelling BRIDGEs
  • kappa
  • the genomic model
  • the bacterial model
  • the signalling model
  • tools
  • results
  • future work
  • references
• human BRIDGEs
  • human aspects
  • communication of science
  • terminology research
  • wiki
  • conversations
  • identity
  • collaboration
  • branding research
  • science fiction writing
  • future applications
  • self-reflection
  • the epic
  • results
  • future work
  • references
• lab notes   
  • collaboration
  • attribution
  • BRIDGE
  • red light
  • red sensor
  • blue light
  • blue sensor
  • green light
  • green sensor
  • modelling
  • safety
  • protocols
• acknowledgements

References

Elowitz, M. B. and S. Leibler (2000). A synthetic oscillatory network of transcriptional regulators. Nature 403(6767): 335-338.

Danino, T., O. Mondragon-Palomino, et al (2009). A synchronized quorum of genetic clocks. Nature 463(7279): 326-330.

Garcia-Ojalvo, J., M. B. Elowitz, et al. (2004). Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. Proceedings of the National Academy of Sciences of the United States of America 101(30): 10955-10960.

Branchini, B. R., Southworth, T. L., Khattak, N. F., Michelini, E. & Roda, A. (2005). Red- and green-emitting firefly luciferase mutants for bioluminescent reporter applications. Analytical Biochemistry 345, 140-148.

Branchini, B. R., Ablamsky, D. M., Murtiashaw, M. H., Uzasci, L., Fraga, H. & Southworth, T. L. (2007). Thermostable red and green light-producing firefly luciferase mutants for bioluminescent reporter applications. Analytical Biochemistry 361, 253-262.

Moradi, A., Hosseinkhani, S., Naderi-Manesh, H., Sadeghizadeh, M. & Alipour, B. S. (2009). Effect of Charge Distribution in a Flexible Loop on the Bioluminescence Color of Firefly Luciferases. Biochemistry 48, 575-582.

O'Kane, D. J. & Lee, J. (1985). Chemical characterization of lumazine protein from Photobacterium leiognathi: comparison with lumazine protein from Photobacterium phosphoreum. Biochemistry 24, 1467-1475.

Fujii, H., Noda, K., Asami, Y., Kuroda, A., Sakata, M. & Tokida, A. (2007). Increase in bioluminescence intensity of firefly luciferase using genetic modification. Analytical Biochemistry 366, 131-136.

Shapirol, E., Lu, C., Baneyx, F. (2009). Design and characterization of novel trypsin-resistant firefly luciferases by site-directed mutagenesis. Protein Eng Des Sel 22(11): 655-663.

Levskaya, A., Chevalier, A. A., Tabor, J. J. & other authors (2005). Synthetic biology: Engineering Escherichia coli to see light. Nature 438, 441-442.

Gambetta, G. A. & Lagarias, J. C. (2001). Genetic engineering of phytochrome biosynthesis in bacteria. Proceedings of the National Academy of Sciences of the United States of America 98, 10566-10571.

Levskaya, A., O. D. Weiner, et al. (2009). Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature Vol 461

Strickland, D., Moffat, K. & Sosnick, T. R. (2008). Light-activated DNA binding in a designed allosteric protein. Proceedings of the National Academy of Sciences 105, 10709-10714.

Schüttrigkeit, T. A., Kompa, C. K., Salomon, M., Rüdiger, W. & Michel-Beyerle, M. E. (2003). Primary photophysics of the FMN binding LOV2 domain of the plant blue light receptor phototropin of Avena sativa. Chemical Physics 294, 501-508.

Wu, Y. I., D. Frey, et al. (2009). A genetically encoded photoactivatable Rac controls the motility of living cells. Nature Vol 461

Hirose, Y., Shimada, T., Narikawa, R., Katayama, M. & Ikeuchi, M. (2008). Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proceedings of the National Academy of Sciences 105, 9528-9533.

Edinburgh 2009 team wiki, https://2009.igem.org/Team:Edinburgh.

Ljubljana 2007 team wiki, http://parts.mit.edu/igem07/index.php/Ljubljana.

UT Austin 2004 team wiki (Registry coliroid page), http://partsregistry.org/Coliroid.

Harvard 2008 team wiki, https://2008.igem.org/Team:Harvard.

EPF Lausanne 2009 team wiki, https://2009.igem.org/Team:EPF-Lausanne.

Tokyo-Nokogen 2009 team wiki, https://2009.igem.org/Team:Tokyo-Nokogen.

Cambridge 2010 team wiki, https://2010.igem.org/Team:Cambridge.

Mexico UNAM-Genomics 2010 team wiki, https://2010.igem.org/Team:UNAM-Genomics_Mexico.