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From 2010.igem.org

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This section will be removed before wiki-freeze!

DO NOT EDIT NOW!!!

General remarks

• Protein names: normally written
• gene names: italic
• Directed movement NOT running, please correct!
• chemotaxis pathway NOT Chemotaxis nor chemotactic
• E. lemming with space
  • E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified E. coli
• far-red light, not far red light, please correct!
• internal links - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
• in silico & in vivo, not in-silico & in-vivo

Teaser & Animations

• Drafts of teaser & animation text

Responsibilities, Tasks & Suggestions

Introduction

• https://2010.igem.org/Team:ETHZ_Basel
  • Responsibility: George
  • Proofreading: Elsa
  • Status: 80%
  • ToDo: change pictures, improve text
  • Suggestions: see the special section.

• https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
  • Responsibility: Simona
  • Proofreading: Thanuja
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
  • Responsibility: George
  • Proofreading: Elsa
  • Status: 50%
  • ToDo: improve text, add speech
  • Suggestions:
    • Elsa: change background to other color
    • Jörg: add automated microscope image
    • Vincent: make chapters, different effect for highlighting of parts

• https://2010.igem.org/Team:ETHZ_Basel/Introduction/Media
  • Responsibility: Katharina
  • Proofreading: Elsa
  • Status:
  • ToDo:
  • Suggestions:

Biology & Wet Laboratory

• https://2010.igem.org/Team:ETHZ_Basel/Biology
  • Responsibility: Elsa
  • Proofreading: Katharina
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism
  • Responsibility: Elsa
  • Proofreading: Sonja
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning
  • Responsibility: Sonja
  • Proofreading: Elsa
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
  • Responsibility: Sonja
  • Proofreading: Katharina
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Archeal_Light_Receptor
  • Responsibility: Elsa
  • Proofreading: Sonja
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety
  • Responsibility: Elsa
  • Proofreading: Christoph
  • Status:
  • ToDo:
  • Suggestions:

Mathematical Modeling

• https://2010.igem.org/Team:ETHZ_Basel/Modeling
  • Responsibility: Moritz
  • Proofreading: Christoph
  • Status:
  • ToDo:
  • Suggestions:
    • Someone: improve language

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
  • Responsibility: Moritz
  • Proofreading: Luzi
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
  • Responsibility: George
  • Proofreading: Simona
  • Status:
  • ToDo:
  • Suggestions:
    • Elsa: link to chemotaxis
    • Moritz: state that models are based on published models and adapted by us.
    • Someone: add picture from chemotaxis pathway

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
  • Responsibility: Simona
  • Proofreading: Luzi
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
  • Responsibility: Moritz
  • Proofreading: Simona
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
  • Responsibility: George
  • Proofreading: Simona
  • Status:
  • ToDo:
  • Suggestions:

Information Processing

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
  • Responsibility: George
  • Proofreading: Thanuja
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope
  • Responsibility: Moritz (finished)
  • Proofreading: Katharina
  • Status: 90%
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
  • Responsibility: Moritz (finished)
  • Proofreading: Christoph
  • Status: 90%
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
  • Responsibility: Moritz (finished)
  • Proofreading: Simona
  • Status: 90%
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
  • Responsibility: Moritz (finished)
  • Proofreading: George
  • Status: 90%
  • ToDo:
  • Suggestions:
    • Jörg: add explanation (legend) to the movie.

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller
  • Responsibility: Simona
  • Proofreading: Thanuja
  • Status: 75%
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game
  • Responsibility: Moritz
  • Proofreading: Simona
  • Status:
  • ToDo:
  • Suggestions:

Achievements

• https://2010.igem.org/Team:ETHZ_Basel/Achievements
  • Responsibility: Thanuja
  • Proofreading: George
  • Status:
  • ToDo:
  • Suggestions: make list of achievements and link them.

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox
  • Responsibility: Katharina
  • Proofreading: Elsa
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox
  • Responsibility: Moritz
  • Proofreading: George
  • Status:
  • ToDo:
  • Suggestions:
    • George: make it shorter.

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Design
  • Responsibility: George
  • Proofreading: Luzi
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Implementation
  • Responsibility: Moritz
  • Proofreading: Katharina
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Technical_Standard
  • Responsibility: Sonja
  • Proofreading: Katharina
  • Status:
  • ToDo:
  • Suggestions:

Team

• https://2010.igem.org/Team:ETHZ_Basel/Team
  • Responsibility: Simona
  • Proofreading: George
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Team/Photos
  • Responsibility: George
  • Proofreading: Simona
  • Status:
  • ToDo:
  • Suggestions:

• https://2010.igem.org/Team:ETHZ_Basel/Team/Acknowledgements
  • Responsibility: Thanuja
  • Proofreading: George
  • Status:
  • ToDo:
  • Suggestions:

Suggestions

• https://2010.igem.org/Team:ETHZ_Basel/Biology: Elsa

first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
second paragraph: quite unclear, if possible, add more details & explain more
add a few sentences (and link them) regarding ARL & Safety

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing

50 μm (?) high flow channel; remove question mark

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow

in second part of the page, 'cells with highest score'; define the score
clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch

Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.

• https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation

added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization

spacing, subheadings & some bullet points); suggesting more images for the user experience part

• https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection

Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.

• https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria

check with biology to keep it updated (check list)

• https://2010.igem.org/Team:ETHZ_Basel/Team

Add link to Biozentrum Unibas.

Christoph will do this by Sunday

• https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading Simona DONE

Christoph:

• first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid

• too many "in order to"

• mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more

• Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!

• Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined#Light_switch_-_Chemotaxis : interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
• "To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading Simona DONE

C: give an idea about the complexity, e.g. high number of proteins and interactions; why did we use only Spiro and Mello?; models: text first as it explains the plots; please gibe a clearer description of the plots, for an external person it's almost not understandable

• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
• make clear we did this completely on our own, not implemented but created!; Great section!!! 'THANKS!!!
• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined C: see above
• https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design C: OK