Team:VT-ENSIMAG/Table5

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To test if our software, taking amino-acid into account, respond well to such a modification (codon optimization), we created 20 nucleotide sequence by randomly back-translated a select agent amino-acid sequence.
To test if our software, taking amino-acid into account, respond well to such a modification (codon optimization), we created 20 nucleotide sequence by randomly back-translated a select agent amino-acid sequence.
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The results of the codon optimization test are presented in [[Team:VT-ENSIMAG/ResultD|degeneracy result]].
 
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Latest revision as of 15:00, 27 September 2010


VT-ENSIMAG over VT campus long.png

Degeneracy




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Home

Our team

Sequence screening

The software: GenoTHREAT

Tests and Results

Screening of the iGEM registry

PCR fusion primer

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Comments

SAIC.jpeg

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If only the nucleotide sequence were screened, it would have been easy for ill-intentioned people to bypass the software: modifying the DNA sequence such as the sequence doesn't mime the dangerous one, but in having the same resulting amino-acid chain. Changing each triplet of nucleotides by a different one but coding for the same amino-acid is enough to obtain such a result.

VTIMAG Codon opt.png


To test if our software, taking amino-acid into account, respond well to such a modification (codon optimization), we created 20 nucleotide sequence by randomly back-translated a select agent amino-acid sequence.



Go back to tests and results page

ALIEN DNA.png
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ALIEN DNA.png