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Team:LMU-Munich/ProSearch/Schedule
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The cell line used in this project is the human embryonic kidney cell line 293T . | The cell line used in this project is the human embryonic kidney cell line 293T . | ||
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The [http://www.ncbi.nlm.nih.gov/sites/entrez?db=ncbisearch NCBI GEO] and [http://www.ebi.ac.uk/arrayexpress/browse.html ArrayExpress] databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained: | The [http://www.ncbi.nlm.nih.gov/sites/entrez?db=ncbisearch NCBI GEO] and [http://www.ebi.ac.uk/arrayexpress/browse.html ArrayExpress] databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained: | ||
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[1] Reference one Geo | [1] Reference one Geo | ||
[1] Reference one Geo | [1] Reference one Geo | ||
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| + | In order to understand gene regulation of apoptosis regulated genes we used the Transcriptional Regulatory Element Database [http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=searchPromForm (TRED)] to extract known promoters and the [http://string-db.org/ STRING] database for known interactions between genes and their transcription factors. | ||
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Revision as of 10:28, 26 September 2010
The cell line used in this project is the human embryonic kidney cell line 293T .
The [http://www.ncbi.nlm.nih.gov/sites/entrez?db=ncbisearch NCBI GEO] and [http://www.ebi.ac.uk/arrayexpress/browse.html ArrayExpress] databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained:
In order to understand gene regulation of apoptosis regulated genes we used the Transcriptional Regulatory Element Database [http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=searchPromForm (TRED)] to extract known promoters and the [http://string-db.org/ STRING] database for known interactions between genes and their transcription factors.
Cell Line
Databases Search
Environmental Condition (EV)
#genes selectively expressed in this EV
Reference
Conduritol B Epoxide treatment
57
[1]
Gammaherpesvirus
103
[2]
HIV integration
1
[3]
HLTV-1 p30
2291
[4]
Hypoxia
2
[5]
RCAS-beta-cateinS37A
55
[6]
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
