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Revision as of 23:18, 27 October 2010

Interaction Mapping Application

The interaction mapping application directs the user through a number of steps: Unfortunately a lot of steps are still required, because the data comes from many sources. Look below for requirements of the application.

Step 1: Enter parts or custom sequences

Step 2: Use the string-db website to find STRING protein ID for each sequence.

Step 3: Map interactions to E. coli, or other organisms.

Step 4: Export to text or Cytoscape

Download

Source code is available in a [http://github.com/jcnossen/InteractionHomologMapping github repository], or by directly downloading the [http://github.com/jcnossen/InteractionHomologMapping/zipball/master code in zip format].

A binary version will be uploaded here: http://jcnossen.github.com/InteractionHomologMapping/

Requirements