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Team:USTC Software/detail
From 2010.igem.org
(Difference between revisions)
(New page: An overview of species list is provided: center 0:E_coli: E.Coli cell; 1:IPTG: IPTG in flask; 2:DNA: initial transformed plasmids; 3:IPTG: IPTG i...) |
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[[Image:USTCS_graph1.JPG|600px|thumb|center]] | [[Image:USTCS_graph1.JPG|600px|thumb|center]] | ||
| + | where each species with its specific identifier has its own meaning: | ||
| - | 0:E_coli: E.Coli cell; | + | *0:E_coli: E.Coli cell; |
| - | 1:IPTG: IPTG in flask; | + | *1:IPTG: IPTG in flask; |
| - | 2:DNA: initial transformed plasmids; | + | *2:DNA: initial transformed plasmids; |
| - | 3:IPTG: IPTG in E.Coli due to diffusion; | + | *3:IPTG: IPTG in E.Coli due to diffusion; |
| - | 4:RNA: mRNA of tetR; | + | *4:RNA: mRNA of tetR; |
| - | 5:RNA: mRNA of lacI; | + | *5:RNA: mRNA of lacI; |
| - | 6:RNA: mRNA of cIlam; | + | *6:RNA: mRNA of cIlam; |
| - | 7:tetR154: tetR protein; | + | *7:tetR154: tetR protein; |
| - | 8:lacI153: lacI protein; | + | *8:lacI153: lacI protein; |
| - | 9:cIlam156: lacI protein; | + | *9:cIlam156: lacI protein; |
| - | 10:(tetR154)2: tetR dimer; | + | *10:(tetR154)2: tetR dimer; |
| - | 11:(lacI153)2: lacI dimer; | + | *11:(lacI153)2: lacI dimer; |
| - | 12:(cIlam156)2: cIlam dimer; | + | *12:(cIlam156)2: cIlam dimer; |
| - | 13:DNA;(tetR154)2: complex of tetR dimer binding to pTet gene of plasmid DNA; | + | *13:DNA;(tetR154)2: complex of tetR dimer binding to pTet gene of plasmid DNA; |
| - | 14:(lacI153)4; lacI tetramer; | + | *14:(lacI153)4; lacI tetramer; |
| - | 15:DNA;(cIlam156)2: complex of cIlam dimer binding to pCI gene of plasmid DNA; | + | *15:DNA;(cIlam156)2: complex of cIlam dimer binding to pCI gene of plasmid DNA; |
| - | 16:DNA;(cIlam156)2;(tetR154)2: complex of plasmid of DNA with both pCI and pTet genes bound with cIlam dimer and tetR dimer; | + | *16:DNA;(cIlam156)2;(tetR154)2: complex of plasmid of DNA with both pCI and pTet genes bound with cIlam dimer and tetR dimer; |
| - | 17:DNA;(lacI153)4: complex of LacI tetramer binding to pLacI gene plasmid DNA; | + | *17:DNA;(lacI153)4: complex of LacI tetramer binding to pLacI gene plasmid DNA; |
| - | 18:DNA;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pLacI and pTet genes bound with LacI tetramer and tetR dimer, respectively; | + | *18:DNA;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pLacI and pTet genes bound with LacI tetramer and tetR dimer, respectively; |
| - | 19:IPTG;(lacI153)4: complex of LacI tetramer binding to pLacI gene of plasmid DNA; | + | *19:IPTG;(lacI153)4: complex of LacI tetramer binding to pLacI gene of plasmid DNA; |
| - | 20:DNA;(cIlam156)2;(lacI153)4: complex of plasmid DNA with both pCI and placI genes bound with cIlam dimer and lacI tetramer, respectively; | + | *20:DNA;(cIlam156)2;(lacI153)4: complex of plasmid DNA with both pCI and placI genes bound with cIlam dimer and lacI tetramer, respectively; |
| - | 21:DNA;(cIlam156)2;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pCI, placI and pTet genes bound with cIlam dimer, lacI tetramer and tetR dimer, respectively; | + | *21:DNA;(cIlam156)2;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pCI, placI and pTet genes bound with cIlam dimer, lacI tetramer and tetR dimer, respectively; |
Since there are 153 reactions in total, we only provide a screenshot (we strongly recommend users to run our example to learn more details about automatic modeling): | Since there are 153 reactions in total, we only provide a screenshot (we strongly recommend users to run our example to learn more details about automatic modeling): | ||
[[Image:USTCS_graph2.JPG|600px|thumb|center]] | [[Image:USTCS_graph2.JPG|600px|thumb|center]] | ||
Revision as of 15:28, 27 October 2010
An overview of species list is provided:
where each species with its specific identifier has its own meaning:
- 0:E_coli: E.Coli cell;
- 1:IPTG: IPTG in flask;
- 2:DNA: initial transformed plasmids;
- 3:IPTG: IPTG in E.Coli due to diffusion;
- 4:RNA: mRNA of tetR;
- 5:RNA: mRNA of lacI;
- 6:RNA: mRNA of cIlam;
- 7:tetR154: tetR protein;
- 8:lacI153: lacI protein;
- 9:cIlam156: lacI protein;
- 10:(tetR154)2: tetR dimer;
- 11:(lacI153)2: lacI dimer;
- 12:(cIlam156)2: cIlam dimer;
- 13:DNA;(tetR154)2: complex of tetR dimer binding to pTet gene of plasmid DNA;
- 14:(lacI153)4; lacI tetramer;
- 15:DNA;(cIlam156)2: complex of cIlam dimer binding to pCI gene of plasmid DNA;
- 16:DNA;(cIlam156)2;(tetR154)2: complex of plasmid of DNA with both pCI and pTet genes bound with cIlam dimer and tetR dimer;
- 17:DNA;(lacI153)4: complex of LacI tetramer binding to pLacI gene plasmid DNA;
- 18:DNA;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pLacI and pTet genes bound with LacI tetramer and tetR dimer, respectively;
- 19:IPTG;(lacI153)4: complex of LacI tetramer binding to pLacI gene of plasmid DNA;
- 20:DNA;(cIlam156)2;(lacI153)4: complex of plasmid DNA with both pCI and placI genes bound with cIlam dimer and lacI tetramer, respectively;
- 21:DNA;(cIlam156)2;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pCI, placI and pTet genes bound with cIlam dimer, lacI tetramer and tetR dimer, respectively;
Since there are 153 reactions in total, we only provide a screenshot (we strongly recommend users to run our example to learn more details about automatic modeling):
