Team:Stockholm/Modelling/model discuss

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#Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation, Sergey Proshkin, A. Rachid Rahmouni, Alexander Mironov, Evgeny Nudler, Science 23 April 2010: Vol. 328. no. 5977, pp. 504 - 508 DOI: 10.1126/science.1184939
#Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation, Sergey Proshkin, A. Rachid Rahmouni, Alexander Mironov, Evgeny Nudler, Science 23 April 2010: Vol. 328. no. 5977, pp. 504 - 508 DOI: 10.1126/science.1184939
#Bremer H, Dennis PP: Modulation of chemical composition and other parameters of the cell by growth rate. In: Escherichia coli and Salmonella: Cellular and Molecular Biology (edited by Neidhart F. C. et al.), ASM Press, Washington DC, ed. 2 1996 , 1553-1569.
#Bremer H, Dennis PP: Modulation of chemical composition and other parameters of the cell by growth rate. In: Escherichia coli and Salmonella: Cellular and Molecular Biology (edited by Neidhart F. C. et al.), ASM Press, Washington DC, ed. 2 1996 , 1553-1569.
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#The mathematics of tanning, Josef Thingnes, Leiv Øyehaug, Eivind Hovig,  and Stig W Omholt, BMC Systems Biology 2009, 3:60doi:10.1186/1752-0509-3-60

Revision as of 22:54, 26 October 2010

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Discussion

References

  1. Analysis of the Lactose Metabolism in E Coli Using Sum of Squares Decomposition. A. Ahmadzadeh, A. Halasz, S. Prajna, A. Jadbabaie, V. Kumar. Proceedings of the IEEE Conference on Decision and Control (CDC), Seville, Spain. 2005
  2. Feedback Regulation in the Lactose Operon: A Mathematical Modeling Study and Comparison with Experimental Data Necmettin Yildirim and Michael C. Mackey, Biophys J. 2003 May; 84(5): 2841–2851.
  3. All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay, Joel G. Belasc, Nature Reviews Molecular Cell Biology 11, 467-478 (July 2010) | doi:10.1038/nrm2917
  4. Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes, Dokyun Na, Sunjae Lee and Doheon Lee, BMC Systems Biology 2010, 4:71doi:10.1186/1752-0509-4-71
  5. Codon usage determines translation rate in Escherichia coli, Michael A. Sørensen1, C. G. Kurland and Steen Pedersen, J Mol Biol. 1989 May 20;207(2):365-77
  6. Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation, Sergey Proshkin, A. Rachid Rahmouni, Alexander Mironov, Evgeny Nudler, Science 23 April 2010: Vol. 328. no. 5977, pp. 504 - 508 DOI: 10.1126/science.1184939
  7. Bremer H, Dennis PP: Modulation of chemical composition and other parameters of the cell by growth rate. In: Escherichia coli and Salmonella: Cellular and Molecular Biology (edited by Neidhart F. C. et al.), ASM Press, Washington DC, ed. 2 1996 , 1553-1569.
  8. The mathematics of tanning, Josef Thingnes, Leiv Øyehaug, Eivind Hovig, and Stig W Omholt, BMC Systems Biology 2009, 3:60doi:10.1186/1752-0509-3-60
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