Team:Nevada/Interpolated Data

From 2010.igem.org

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== Interpolated Data Set ==
== Interpolated Data Set ==
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Table
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{| border="1"
 +
|Raw Data
 +
|ICE1
 +
|DREB1A
 +
|DREB1B
 +
|DREB1C
 +
|rd29A
 +
|ZAT6
 +
|RAP2.1
 +
|RAP2.6
 +
|-
 +
|t0
 +
|1358.1
 +
|96.6
 +
|24.5
 +
|69.4
 +
|1509.2
 +
|145.3
 +
|100.4
 +
|58.5
 +
|-
 +
|t1
 +
|1450.6
 +
|4600.5
 +
|3748.3
 +
|9051.6
 +
|2125.8
 +
|455.4
 +
|78.4
 +
|58.2
 +
|-
 +
|t2
 +
|1515
 +
|6617.4
 +
|5072.8
 +
|12724.1
 +
|5330.4
 +
|965.3
 +
|166.6
 +
|55.8
 +
|-
 +
|t3
 +
|1547.9
 +
|6181.2
 +
|4099
 +
|11249.3
 +
|10644.4
 +
|1620.6
 +
|357.8
 +
|52.3
 +
|-
 +
|t4
 +
|1566.7
 +
|5400.5
 +
|2970.9
 +
|9273.8
 +
|15161.9
 +
|2168.8
 +
|549.6
 +
|51.6
 +
|-
 +
|t5
 +
|1576.1
 +
|4709.9
 +
|2112.2
 +
|7731.3
 +
|18402.6
 +
|2571.8
 +
|722.5
 +
|53.9
 +
|-
 +
|t6
 +
|1577.2
 +
|4098.1
 +
|1489.2
 +
|6567.6
 +
|20526.3
 +
|2847.7
 +
|878.6
 +
|59
 +
|-
 +
|t7
 +
|1571.2
 +
|3554
 +
|1068.2
 +
|5728.6
 +
|21692.4
 +
|3014.6
 +
|1020.5
 +
|66.4
 +
|-
 +
|t8
 +
|1559.4
 +
|3066.1
 +
|815.6
 +
|5160.2
 +
|22060.6
 +
|3090.8
 +
|1150.5
 +
|75.8
 +
|-
 +
|t9
 +
|1542.8
 +
|2623.4
 +
|697.7
 +
|4808.4
 +
|21790.5
 +
|3094.3
 +
|1271.1
 +
|86.8
 +
|-
 +
|t10
 +
|1522.6
 +
|2214.4
 +
|680.8
 +
|4618.8
 +
|21041.6
 +
|3043.4
 +
|1384.4
 +
|98.9
 +
|-
 +
|t11
 +
|1500.2
 +
|1828
 +
|731.3
 +
|4537.6
 +
|19973.6
 +
|2956.1
 +
|1493.7
 +
|111.8
 +
|-
 +
|t12
 +
|1476.5
 +
|1452.8
 +
|815.4
 +
|4510.4
 +
|18745.9
 +
|2850.7
 +
|1599.3
 +
|125
 +
|-
 +
|t13
 +
|1452.8
 +
|1077.6
 +
|899.5
 +
|4483.2
 +
|17518.2
 +
|2745.3
 +
|1705.5
 +
|138.3
 +
|-
 +
|t14
 +
|1430.4
 +
|691.2
 +
|950
 +
|4402
 +
|16450.2
 +
|2658
 +
|1814.2
 +
|151.1
 +
|-
 +
|t15
 +
|1410.2
 +
|282.2
 +
|933.1
 +
|4212.4
 +
|15701.3
 +
|2607.1
 +
|1927.5
 +
|163.2
 +
|}
== Log Base 2 of Normalized Ratios ==
== Log Base 2 of Normalized Ratios ==

Revision as of 06:40, 26 October 2010

Binary Bender.png

 


Contents

Interpolation Method

Natural cubic splines were made based on the four time points for each gene. This produced 3 splines per gene: one for the interval from 0 to 3 hours, the second from 3 to 6 hours and a final one for 6 to 24 hours. For all genes, the final spline was also used to extrapolate out to 30 hours, in order to get a sense of whether or not some of these genes may have a delayed response to freezing. 16 time points were taken from the 30-hour interpolated/extrapolated data at 2 hour intervals to produce this data set.

Interpolated Data Set

Raw Data ICE1 DREB1A DREB1B DREB1C rd29A ZAT6 RAP2.1 RAP2.6
t0 1358.1 96.6 24.5 69.4 1509.2 145.3 100.4 58.5
t1 1450.6 4600.5 3748.3 9051.6 2125.8 455.4 78.4 58.2
t2 1515 6617.4 5072.8 12724.1 5330.4 965.3 166.6 55.8
t3 1547.9 6181.2 4099 11249.3 10644.4 1620.6 357.8 52.3
t4 1566.7 5400.5 2970.9 9273.8 15161.9 2168.8 549.6 51.6
t5 1576.1 4709.9 2112.2 7731.3 18402.6 2571.8 722.5 53.9
t6 1577.2 4098.1 1489.2 6567.6 20526.3 2847.7 878.6 59
t7 1571.2 3554 1068.2 5728.6 21692.4 3014.6 1020.5 66.4
t8 1559.4 3066.1 815.6 5160.2 22060.6 3090.8 1150.5 75.8
t9 1542.8 2623.4 697.7 4808.4 21790.5 3094.3 1271.1 86.8
t10 1522.6 2214.4 680.8 4618.8 21041.6 3043.4 1384.4 98.9
t11 1500.2 1828 731.3 4537.6 19973.6 2956.1 1493.7 111.8
t12 1476.5 1452.8 815.4 4510.4 18745.9 2850.7 1599.3 125
t13 1452.8 1077.6 899.5 4483.2 17518.2 2745.3 1705.5 138.3
t14 1430.4 691.2 950 4402 16450.2 2658 1814.2 151.1
t15 1410.2 282.2 933.1 4212.4 15701.3 2607.1 1927.5 163.2

Log Base 2 of Normalized Ratios

Table

Boolean Values (Threshold of 3.5)

Table

Boolean Input Functions

  • Link to ICE1 inputs
  • Link to DREB1B inputs
  • Link to DREB1C inputs
  • Link to rd29A inputs
  • Link to RAP2.6 inputs
Retrieved from "http://2010.igem.org/Team:Nevada/Interpolated_Data"