Team:LMU-Munich/ProSearch

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=ProSearch System=
=ProSearch System=
This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T.
This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T.
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#!/bin/sh
 
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echo Content-type: text/html
 
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echo ""
 
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### $QUERY_STRING=namex=valuex&namey=valuey&namez=valuez
 
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QS=`echo $QUERY_STRING | sed -e s/\\\`//g -e s/\"//g`
 
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str1=`echo $QS|awk -F\& '{printf $1}'`
 
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str2=`echo $QS|awk -F\& '{printf $2}'`
 
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arg1=`echo $str1|awk -F= '{printf $2}'`
 
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arg2=`echo $str2|awk -F= '{printf $2}'`
 
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/bin/cat << EOM
 
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<HTML>
 
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<HEAD><TITLE>Transcription Factors of genes differentially expressed in condition $arg1 </TITLE>
 
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</HEAD>
 
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<BODY bgcolor="#cccccc" text="#000000">
 
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<HR SIZE=5>
 
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<H1>TFs of genes differentially expressed in condition $arg1</H1>
 
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<HR SIZE=5>
 
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<P>
 
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<SMALL>
 
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<PRE>
 
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EOM
 
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java GetTFsPromoters "$arg1" "$arg2"
 
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cat << EOM
 
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</PRE>
 
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</SMALL>
 
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<P>
 
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</BODY>
 
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</HTML>
 
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EOM
 
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Revision as of 20:52, 13 October 2010


ProSearch System

This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T.


 

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