Team:LMU-Munich/ProSearch
From 2010.igem.org
(Difference between revisions)
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This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T. | This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T. | ||
- | + | #!/bin/sh | |
+ | |||
+ | echo Content-type: text/html | ||
+ | echo "" | ||
+ | |||
+ | ### $QUERY_STRING=namex=valuex&namey=valuey&namez=valuez | ||
+ | |||
+ | QS=`echo $QUERY_STRING | sed -e s/\\\`//g -e s/\"//g` | ||
+ | str1=`echo $QS|awk -F\& '{printf $1}'` | ||
+ | str2=`echo $QS|awk -F\& '{printf $2}'` | ||
+ | arg1=`echo $str1|awk -F= '{printf $2}'` | ||
+ | arg2=`echo $str2|awk -F= '{printf $2}'` | ||
+ | |||
+ | /bin/cat << EOM | ||
+ | <HTML> | ||
+ | <HEAD><TITLE>Transcription Factors of genes differentially expressed in condition $arg1 </TITLE> | ||
+ | </HEAD> | ||
+ | <BODY bgcolor="#cccccc" text="#000000"> | ||
+ | <HR SIZE=5> | ||
+ | <H1>TFs of genes differentially expressed in condition $arg1</H1> | ||
+ | <HR SIZE=5> | ||
+ | <P> | ||
+ | <SMALL> | ||
+ | <PRE> | ||
+ | EOM | ||
+ | |||
+ | java GetTFsPromoters "$arg1" "$arg2" | ||
+ | |||
+ | cat << EOM | ||
+ | </PRE> | ||
+ | </SMALL> | ||
+ | <P> | ||
+ | </BODY> | ||
+ | </HTML> | ||
+ | EOM | ||
<!-- Include the next line at the end of every page --> | <!-- Include the next line at the end of every page --> | ||
{{:Team:LMU-Munich/Templates/Page Footer}} | {{:Team:LMU-Munich/Templates/Page Footer}} |
Revision as of 20:50, 13 October 2010