Team:Stockholm/20 September 2010

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(Difference between revisions)
(→Andreas)
(→Andreas)
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*Incubation: 37 °C, 2:00 (NgoMIV & AgeI); 0:30 (FD)
*Incubation: 37 °C, 2:00 (NgoMIV & AgeI); 0:30 (FD)
*Inactivation: 80 °C, 20 min
*Inactivation: 80 °C, 20 min
 +
 +
====Gel verification====
 +
1.5 % agarose, 120 V
 +
 +
'''Expected bands'''
 +
*Dig pSB1C3.N-LMWP A+S 20/9: 2118 bp, (14 bp)
 +
*Dig pMA.SOD⋅His N+S 20/9: 2416 bp, 503 bp
 +
*Dig pSB1C3.N-LMWP E+A 20/9: 2063 bp, 69 bp
 +
*Dig pSB1K3.N-TAT⋅SOD⋅His 4 X+P 20/9: ≈2200 bp, 558 bp
 +
 +
'''Results'''<br />
 +
 +
====Ligations====
 +
*[Dig pSB1K3.RFP E+P 14/9] = 66.6 ng/&mu;l
 +
*[Dig pMA.His&sdot;SOD E+A 14/9] = 66.6 ng/&mu;l
 +
*[Dig pSB1C3.C-TAT N+P 15/9] = 66.6 ng/&mu;l
 +
*[Dig pSB1C3.N-LMWP A+S 20/9] = 33.3 ng/&mu;l
 +
*[Dig pMA.SOD&sdot;His N+S 20/9] = 33.3 ng/&mu;l
 +
*[Dig pSB1C3.N-LMWP E+A 20/9] = 33.3 ng/&mu;l
 +
*[Dig pSB1K3.N-TAT&sdot;SOD&sdot;His 4 X+P 20/9] = 33.3 ng/&mu;l
 +
 +
{|border="1" cellpadding="1" cellspacing="0"
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|&nbsp;
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!width="80"|pSB1C3. N-LMWP&sdot;SH
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!width="80"|pSB1K3. N-LMWP&sdot;SH
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!width="80"|pSB1A2. RBS.yCCS
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!width="80"|pEX. N-TAT&sdot;SH
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|-
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|10X T4 Ligase buffer
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|align="center"|2
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|align="center"|2
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|align="center"|2
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|align="center"|2
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|-
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|dH<sub>2</sub>O
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|align="center"|9
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|align="center"|0
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|align="center"|11
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|align="center"|11
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|-
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|Vector DNA
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|align="center"|2
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|align="center"|1.5
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|align="center"|1.5
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|align="center"|1.5
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|-
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|Insert 1 DNA
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|align="center"|6
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|align="center"|4.5
 +
|align="center"|4.5
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|align="center"|4.5
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|-
 +
|Insert 2 DNA
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|align="center"|&ndash;
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|align="center"|11
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|align="center"|&ndash;
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|align="center"|&ndash;
 +
|-
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|T4 DNA ligase
 +
|align="center"|1
 +
|align="center"|1
 +
|align="center"|1
 +
|align="center"|1
 +
|-
 +
|&nbsp;
 +
!20 &mu;l
 +
!20 &mu;l
 +
!20 &mu;l
 +
!20 &mu;l
 +
|}
 +
*Incubation: 22 &deg;C, 15 min
 +
 +
====Transformations====
 +
Standard transformations.
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*1 &mu;l ligation mix
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**Lig pSB1C3.N-LMWP&sdot;SH
 +
**Lig pSB1K3.N-LMWP&sdot;SH
 +
**Lig pSB1A2.RBS.yCCS
 +
**Lig pEX.N-TAT&sdot;SH

Revision as of 21:56, 23 September 2010

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Contents

Andreas

Assembly of new parts

  1. pSB1K3.N-LMWP⋅SOD⋅His
    • Dig pSB1C3.N-LMWP (E+A)
    • Dig pMA.SOD⋅His (N+P)
    • Dig pSB1K3.RFP (E+P)
  2. pSB1C3.N-LMWP⋅SOD⋅His
    • Dig pSB1C3.N-LMWP (A+S)
    • Dig pMA.SOD⋅His (N+S)

Digestions

  pSB1C3. N-LMWP pMA. SOD⋅His pSB1C3. N-LMWP pSB1K3. N-TAT⋅SOD⋅ His 4
10X FastDigest buffer 3 3 3 2
dH2O 15.2 4.1 15.2 11.4
DNA (1 μg) 9.8 20.9 9.8 4.6
AgeI 1 0 1 0
NgoMIV 0 1 0 0
FD SpeI 1 1 0 0
FD EcoRI 0 0 1 0
FD PstI 0 0 0 1
FD XbaI 0 0 0 1
  30 μl 30 μl 30 μl 20 μl
  • Incubation: 37 °C, 2:00 (NgoMIV & AgeI); 0:30 (FD)
  • Inactivation: 80 °C, 20 min

Gel verification

1.5 % agarose, 120 V

Expected bands

  • Dig pSB1C3.N-LMWP A+S 20/9: 2118 bp, (14 bp)
  • Dig pMA.SOD⋅His N+S 20/9: 2416 bp, 503 bp
  • Dig pSB1C3.N-LMWP E+A 20/9: 2063 bp, 69 bp
  • Dig pSB1K3.N-TAT⋅SOD⋅His 4 X+P 20/9: ≈2200 bp, 558 bp

Results

Ligations

  • [Dig pSB1K3.RFP E+P 14/9] = 66.6 ng/μl
  • [Dig pMA.His⋅SOD E+A 14/9] = 66.6 ng/μl
  • [Dig pSB1C3.C-TAT N+P 15/9] = 66.6 ng/μl
  • [Dig pSB1C3.N-LMWP A+S 20/9] = 33.3 ng/μl
  • [Dig pMA.SOD⋅His N+S 20/9] = 33.3 ng/μl
  • [Dig pSB1C3.N-LMWP E+A 20/9] = 33.3 ng/μl
  • [Dig pSB1K3.N-TAT⋅SOD⋅His 4 X+P 20/9] = 33.3 ng/μl
  pSB1C3. N-LMWP⋅SH pSB1K3. N-LMWP⋅SH pSB1A2. RBS.yCCS pEX. N-TAT⋅SH
10X T4 Ligase buffer 2 2 2 2
dH2O 9 0 11 11
Vector DNA 2 1.5 1.5 1.5
Insert 1 DNA 6 4.5 4.5 4.5
Insert 2 DNA – 11 – –
T4 DNA ligase 1 1 1 1
  20 μl 20 μl 20 μl 20 μl
  • Incubation: 22 °C, 15 min

Transformations

Standard transformations.

  • 1 μl ligation mix
    • Lig pSB1C3.N-LMWP⋅SH
    • Lig pSB1K3.N-LMWP⋅SH
    • Lig pSB1A2.RBS.yCCS
    • Lig pEX.N-TAT⋅SH
Retrieved from "http://2010.igem.org/Team:Stockholm/20_September_2010"