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| <span style=font-size:30px><font face="Maiandra GD"><b>PCR Strategy</b></font></span> | | <span style=font-size:30px><font face="Maiandra GD"><b>PCR Strategy</b></font></span> |
Revision as of 08:54, 13 October 2010
PCR Strategy
V_STAT1 (expression)
Primer | Direction | Sequences | Length |
V_STAT_F | Forward(NdeI) | 5’-TGTTCATATGGCTAATGTCTCAGTGGTACGAACTTCAG-3’ | 24bp |
V_STAT_R | Reverse(BamHI) | 5’-TATCGGATCCGAATTTACACTTCAGACACAGAAATCAAC-3’ | 25bp |
Materials | Amount |
STAT1(KRIBB) (template) | 150pmole |
V_STAT_F | 50pmole |
V_STAT_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
STAT1 (submission)
Primer | Direction | Sequences | Length |
STAT_F | Forward | 5’-ATGTCTCAGTGGTACGAACTTCAG-3’ | 24bp |
STAT_R | Reverse | 5’-TTACACTTCAGACACAGAAATCAAC-3’ | 25bp |
Materials | Amount |
STAT1(KRIBB) (template) | 150pmole |
STAT_F | 50pmole |
STAT_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Fusion Antibody Receptor (Submission)
Primer | Direction | Sequences | Length |
SIG_F | Forward | 5’-ATGGTCTTTTTAAATTCCTCTCCC-3’ | 24bp |
Ab_R | Reverse | 5’-GGGGCTGTTGTTTTGGCTGAGG-3’ | 22bp |
Materials | Amount |
Fusion antibody receptor T vector (template) | 150pmole |
SIG_F | 50pmole |
Ab_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Signal Peptide (Submission)
Primer | Direction | Sequences | Length |
SIG_F | Forward | 5’-ATGGTCTTTTTAAATTCCTCTCCC-3’ | 24bp |
SIG_R | Reverse | 5’-AGCCGCCACCAACCGAGTAGAAA-3’ | 23bp |
Materials | Amount |
Fusion antibody receptor T vector (template) | 150pmole |
SIG_F | 50pmole |
SIG_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Ig-like (Submission)
Primer | Direction | Sequences | Length |
IG_F | Forward | 5’-AGGCCGTCCCCGACCTTGCCTG-3’ | 22bp |
IG_R | Reverse | 5’-GGAGTCATCATCATCATCATCATC-3’ | 24bp |
Materials | Amount |
Fusion antibody receptor T vector (template) | 150pmole |
IG_F | 50pmole |
IG_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Signal Peptide + Ig-like (Submission)
Primer | Direction | Sequences | Length |
SIG_F | Forward | 5’-ATGGTCTTTTTAAATTCCTCTCCC-3’ | 24bp |
IG_R | Reverse | 5’-GGAGTCATCATCATCATCATCATC-3’ | 24bp |
Materials | Amount |
Fusion antibody receptor T vector (template) | 150pmole |
SIG_F | 50pmole |
IG_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Antibody (Submission)
Primer | Direction | Sequences | Length |
Ab_F | Forward | 5’-ACCCAGTCTCCAGCAATCATGTC-3’ | 23bp |
Ab_R | Reverse | 5’-GGGGCTGTTGTTTTGGCTGAGG-3’ | 22bp |
Materials | Amount |
Fusion antibody receptor T vector (template) | 150pmole |
Ab_F | 50pmole |
Ab_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
V_Fusion Antibody Receptor (Expression)
Primer | Direction | Sequences | Length |
SIG_F | Forward | 5’-ATGGTCTTTTTAAATTCCTCTCCC-3’ | 24bp |
Linker_R | Reverse | 5’-CTCTCTTCCAGGGCTTCCAGAACGGGGCTGTTGTTTTGGCTGAGGA-3’ | 46(23+23)bp |
Materials | Amount |
Fusion antibody receptor T vector (template) | 150pmole |
SIG_F | 50pmole |
Linker_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
B_FGFR1 (Submission)
Primer | Direction | Sequences | Length |
B_FGFR_F | Forward | 5’-GTTCTGGAAGCCCTGGAAGAGAG-3’ | 23bp |
B_FGFR_R | Reverse | 5’-TCAGCGGCGTTTGAGTCCGCCAT-3’ | 23bp |
Materials | Amount |
FGFR1(KRIBB) (template) | 150pmole |
B_FGFR_F | 50pmole |
B_FGFR_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
VB_FGFR1 (Expression)
Primer | Direction | Sequences | Length |
Linker_F | Forward | 5’-TCCTCAGCCAAAACAACAGCCCCGTTCTGGAAGCCCTGGAAGAGAG-3’ | 46(23+23)bp |
B_FGFR_R | Reverse | 5’-TCAGCGGCGTTTGAGTCCGCCAT-3’ | 23bp |
Materials | Amount |
FGFR1(KRIBB) (template) | 150pmole |
Linker_F | 50pmole |
B_FGFR_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Fusion Antibody Receptor (Expression)
Primer | Direction | Sequences | Length |
SIG_F | Forward | 5’-ATGGTCTTTTTAAATTCCTCTCCC-3’ | 24bp |
B_FGFR_R | Reverse | 5’-TCAGCGGCGTTTGAGTCCGCCAT-3’ | 23bp |
Materials | Amount |
V_Fusion antibody receptor (template) | 150pmole |
VB_FGFR1(2+3) (template) | 150pmole |
SIG_F | 50pmole |
B_FGFR_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
5’UTR (expression)
Primer | Direction | Sequences | Length |
HR_F | Forward | 5’-AAACCAGTTTTGCCAAAACAAC-3’ | 22bp |
UF_LinkR | Reverse | 5’ –GAGAGGAATTTAAAAAGACCATAAACAACATTTTTCTTTTTTAC - 3’ | 44(22+22)bp |
Materials | Amount |
S.pombe genomic DNA (template) | 150pmole |
HR_F | 50pmole |
UF_LinkR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
3’UTR (expression)
Primer | Direction | Sequences | Length |
HU_LINKF (HA2 + 3’UTR) | Forward | 5’-CCATATGACCCAGATTACGCTTGGAAATTAAATCGTGCGTAAG-3’ | 43(21+22)bp |
HR_R | Reverse | 5’ – GCGTTCTTTTTTAATTCTGAATTAA – 3’ | 25bp |
Materials | Amount |
S.pombe genomic DNA (template) | 150pmole |
HU_LINKF (HA2 + 3’UTR) | 50pmole |
HR_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Selection Marker (expression)
Primer | Direction | Sequences | Length |
HS_LINKF (HA1 + Selection Marker) | Forward | 5’-CCATATGACCCAGATTACGCTAGCAAGCTTAAGCTTAGCTAC-3’ | 42(21+21)bp |
SH_LINKR | Reverse | 5’-GTCAGGAACATCGTATGGGTAGACCTGCAGAAGCTTAAGCTTG-3’ | 43(21+22)bp |
Materials | Amount |
pREP42-GFP vector (template) | 150pmole |
HS_LINKF (HA1 + Selection Marker) | 50pmole |
SH_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Core promoter + GFP (expression)
Primer | Direction | Sequences | Length |
PC_LINKF (Proximal + Core) | Forward | 5’–CAGAATAGACACACGGGCCGACATTGAAGATATATAAAGGAAG–3’ | 43(20+23)bp |
CGFP_R (Core promoter + GFP) | Reverse | 3’-CGACATATGCTTGTACAGCTCG-5’ | 22bp |
Materials | Amount |
pREP42-GFP vector (template) | 150pmole |
PC_LINKF (Proximal + Core) | 50pmole |
CGFP_R (Core promoter + GFP) | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Proximal promoter (expression)
Primer | Direction | Sequences | Length |
PP_F (Proximal promoter) | Forward | 5’-CGCCTGCAGGCGAATAGCTGG–3’ | 21bp |
PC_LINKR | Reverse | 5’–CTTCCTTTATATATCTTCAATGTCGGCCCGTGTGTCTATTCTG–3’ | 43(23+20)bp |
Materials | Amount |
Proximal promoter T vector (template) | 150pmole |
PP_F (Proximal promoter) | 50pmole |
PC_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
GAS Promoter (expression)
Primer | Direction | Sequences | Length |
PP_F (Proximal promoter) | Forward | 5’-CGCCTGCAGGCGAATAGCTGG–3’ | 21bp |
CGFP_R (Core promoter + GFP) | Reverse | 3’-CGACATATGCTTGTACAGCTCG-5’ | 22bp |
Materials | Amount |
Proximal promoter(template) | 150pmole |
Core promoter + GFP(template) | 150pmole |
PP_F (Proximal promoter) | 50pmole |
CGFP_R (Core promoter + GFP) | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
HA1 (expression)
Primer | Direction | Sequences | Length |
FH_LINKF (FGFR + HA1) | Forward | 5’-GCGGACTCAAACGCCGCTGATACCCATACGATGTTCCTGAC-3’ | 41(20+21)bp |
HS_LINKR | Reverse | 5’-GTAGCTAAGCTTAAGCTTGCTAGCGTAATCTGGGTCATATGG-3’ | 42(21+21)bp |
Materials | Amount |
HA T vector (template) | 150pmole |
FH_LINKF (FGFR + HA1) | 50pmole |
HS_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
HA2 (expression)
Primer | Direction | Sequences | Length |
SH_LINKF (Selection Marker + HA2) | Forward | 5’-CAAGCTTAAGCTTCTGCAGGTCTACCCATACGATGTTCCTGAC-3’ | 43(22+21)bp |
HU_LINKR | Reverse | 5’-CTTACGCACGATTTAATTTCCAAGCGTAATCTGGGTCATATGG-3’ | 43(22+21)bp |
Materials | Amount |
HA T vector (template) | 150pmole |
SH_LINKF (Selection Marker + HA2) | 50pmole |
HU_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Fusion antibody receptor (expression)
Primer | Direction | Sequences | Length |
UF_LinkF (5’UTR+FGFR Linker) | Forward | 5’-GTAAAAAAGAAAAATGTTGTTTATGGTCTTTTTAAATTCCTCTC-3’ | 44(22+22)bp |
FH_LINKR | Reverse | 5’-GTCAGGAACATCGTATGGGTATCAGCGGCGTTTGAGTCCGC-3’ | 41(21+20)bp |
Materials | Amount |
Fusion Antibody receptor (template) | 150pmole |
UF_LinkF (5’UTR+FGFR Linker) | 50pmole |
FH_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
5’UTR + Fusion Antibody receptor (expression)
Primer | Direction | Sequences | Length |
HR_F (for homologous recombinant) | Forward | 5’-AAACCAGTTTTGCCAAAACAAC-3’ | 22bp |
FH_LINKR | Reverse | 5’-GTCAGGAACATCGTATGGGTATCAGCGGCGTTTGAGTCCGC-3’ | 41(21+20)bp |
Materials | Amount |
5'UTR (template) | 150pmole |
Fusion Antibody receptor (template) | 150pmole |
FH_LINKF (FGFR + HA1) | 50pmole |
SH_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
HA1 + Selection Marker (expression)
Primer | Direction | Sequences | Length |
FH_LINKF (FGFR + HA1) | Forward | 5’-GCGGACTCAAACGCCGCTGATACCCATACGATGTTCCTGAC-3’ | 41(20+21)bp |
SH_LINKR | Reverse | 5’-GTCAGGAACATCGTATGGGTAGACCTGCAGAAGCTTAAGCTTG-3’ | 43(21+22)bp |
Materials | Amount |
HA1 (template) | 150pmole |
Selection Marker (template) | 150pmole |
FH_LINKF (FGFR + HA1) | 50pmole |
SH_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
HA2 + 3'UTR (expression)
Primer | Direction | Sequences | Length |
SH_LINKF (Selection Marker + HA2) | Forward | 5’-CAAGCTTAAGCTTCTGCAGGTCTACCCATACGATGTTCCTGAC-3’ | 43(22+21)bp |
HR_R | Reverse | 5’ – GCGTTCTTTTTTAATTCTGAATTAA – 3’ | 25bp |
Materials | Amount |
HA2 (template) | 150pmole |
3’UTR (template) | 150pmole |
SH_LINKF (Selection Marker + HA2) | 50pmole |
HR_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
5’UTR - Fusion Antibody receptor + HA1 - Selection Marker (expression)
Primer | Direction | Sequences | Length |
HR_F(for homologous recombinant) | Forward | 5’-AAACCAGTTTTGCCAAAACAAC-3’ | 22bp |
SH_LINKR | Reverse | 5’-GTCAGGAACATCGTATGGGTAGACCTGCAGAAGCTTAAGCTTG-3’ | 43(21+22)bp |
Materials | Amount |
5’UTR - Fusion Antibody receptor (template)
| 150pmole |
HA1 - Selection Marker (template)
| 150pmole |
HR_F (for homologous recombinant) | 50pmole |
SH_LINKR | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
Homologous Recombinant (expression)
Primer | Direction | Sequences | Length |
HR_F(for homologous recombinant) | Forward | 5’-AAACCAGTTTTGCCAAAACAAC-3’ | 22bp |
HR_R | Reverse | 5’ – GCGTTCTTTTTTAATTCTGAATTAA – 3’ | 25bp |
Materials | Amount |
HA2 + 3'UTR (template)
| 150pmole |
5’UTR - Fusion Antibody receptor - HA1 - Selection Marker (template)
| 150pmole |
HR_F (for homologous recombinant) | 50pmole |
HR_R | 50pmole |
dNTP (dNTP mixture 2.5mM TaKaRa) | 5ul |
Taq (Pfu Turbo® DNA Polymerase 2.5U/ μl STRATAGENE) | 0.25ul |
10x buffer (10x cloned Pfu Reaction buffer) | 5ul |
DW (3rd sterile water) | rest |
Total | 50ul |
|