Team:HokkaidoU Japan/NotebookTest
From 2010.igem.org
(Difference between revisions)
(→Friday, September 3, 2010) |
|||
Line 52: | Line 52: | ||
|- | |- | ||
|style="color:red;"|11 | |style="color:red;"|11 | ||
- | |[[#Monday, July 12 | + | |[[#Monday, July 12|12]] |
|13 | |13 | ||
|14 | |14 | ||
Line 62: | Line 62: | ||
|19 | |19 | ||
|20 | |20 | ||
- | |[[#Wednesday, July 21 | + | |[[#Wednesday, July 21|21]] |
|22 | |22 | ||
|23 | |23 | ||
Line 68: | Line 68: | ||
|- | |- | ||
|style="color:red;"|25 | |style="color:red;"|25 | ||
- | |[[#Monday, July 26 | + | |[[#Monday, July 26|26]] |
- | |[[#Tuesday, July 27 | + | |[[#Tuesday, July 27|27]] |
|28 | |28 | ||
|29 | |29 | ||
Line 89: | Line 89: | ||
|- | |- | ||
|style="color:red;"|1 | |style="color:red;"|1 | ||
- | |[[#Monday, August 2 | + | |[[#Monday, August 2|2]] |
|3 | |3 | ||
|4 | |4 | ||
Line 97: | Line 97: | ||
|- | |- | ||
|style="color:red;"|8 | |style="color:red;"|8 | ||
- | |[[#Monday, August 9 | + | |[[#Monday, August 9|9]] |
- | |[[#Tuesday, August 10 | + | |[[#Tuesday, August 10|10]] |
- | |[[#Wednesday, August 11 | + | |[[#Wednesday, August 11|11]] |
- | |[[#Thursday, August 12 | + | |[[#Thursday, August 12|12]] |
- | |[[#Friday, August 13 | + | |[[#Friday, August 13|13]] |
|style="color:blue;"|14 | |style="color:blue;"|14 | ||
|- | |- | ||
|style="color:red;"|15 | |style="color:red;"|15 | ||
- | |[[#Monday, August 16 | + | |[[#Monday, August 16|16]] |
- | |[[#Tuesday, August 17 | + | |[[#Tuesday, August 17|17]] |
- | |[[#Wednesday, August 18 | + | |[[#Wednesday, August 18|18]] |
- | |[[#Thursday, August 19 | + | |[[#Thursday, August 19|19]] |
- | |[[#Friday, August 20 | + | |[[#Friday, August 20|20]] |
|style="color:blue;"|21 | |style="color:blue;"|21 | ||
|- | |- | ||
|style="color:red;"|22 | |style="color:red;"|22 | ||
- | |[[#Monday, August 23 | + | |[[#Monday, August 23|23]] |
- | |[[#Tuesday, August 24 | + | |[[#Tuesday, August 24|24]] |
- | |[[#Wednesday, August 25 | + | |[[#Wednesday, August 25|25]] |
- | |[[#Thursday, August 26 | + | |[[#Thursday, August 26|26]] |
- | |[[#Friday, August 27 | + | |[[#Friday, August 27|27]] |
|style="color:blue;"|28 | |style="color:blue;"|28 | ||
|- | |- | ||
|style="color:red;"|29 | |style="color:red;"|29 | ||
- | |[[#Monday, August 30 | + | |[[#Monday, August 30|30]] |
- | |[[#Tuesday, August 31 | + | |[[#Tuesday, August 31|31]] |
| | | | ||
| | | | ||
Line 144: | Line 144: | ||
| | | | ||
| | | | ||
- | |[[#Wednesday, September 1 | + | |[[#Wednesday, September 1|1]] |
- | |[[#Thursday, September 2 | + | |[[#Thursday, September 2|2]] |
- | |[[#Friday, September 3 | + | |[[#Friday, September 3|3]] |
- | |style="color:blue;"|[[#Saturday, September 4 | + | |style="color:blue;"|[[#Saturday, September 4|4]] |
|- | |- | ||
|style="color:red;"|5 | |style="color:red;"|5 | ||
- | |[[#Monday, September 6 | + | |[[#Monday, September 6|6]] |
- | |[[#Tuesday, September 7 | + | |[[#Tuesday, September 7|7]] |
- | |[[#Wednesday, September 8 | + | |[[#Wednesday, September 8|8]] |
- | |[[#Thursday, September 9 | + | |[[#Thursday, September 9|9]] |
- | |[[#Friday, September 10 | + | |[[#Friday, September 10|10]] |
|style="color:blue;"|11 | |style="color:blue;"|11 | ||
|- | |- | ||
|style="color:red;"|12 | |style="color:red;"|12 | ||
- | |[[#Monday, September 13 | + | |[[#Monday, September 13|13]] |
- | |[[#Tuesday, September 14 | + | |[[#Tuesday, September 14|14]] |
- | |[[#Wednesday, September 15 | + | |[[#Wednesday, September 15|15]] |
- | |[[#Thursday, September 16 | + | |[[#Thursday, September 16|16]] |
- | |[[#Friday, September 17 | + | |[[#Friday, September 17|17]] |
|style="color:blue;"|18 | |style="color:blue;"|18 | ||
|- | |- | ||
|style="color:red;"|19 | |style="color:red;"|19 | ||
- | |[[#Monday, September 20 | + | |[[#Monday, September 20|20]] |
- | |[[#Tuesday, September 21 | + | |[[#Tuesday, September 21|21]] |
- | |[[#Wednesday, September 22 | + | |[[#Wednesday, September 22|22]] |
- | |[[#Thursday, September 23 | + | |[[#Thursday, September 23|23]] |
- | |[[#Friday, September 24 | + | |[[#Friday, September 24|24]] |
|style="color:blue;"|25 | |style="color:blue;"|25 | ||
|- | |- | ||
|style="color:red;"|26 | |style="color:red;"|26 | ||
- | |[[#Monday, September 27 | + | |[[#Monday, September 27|27]] |
- | |[[#Tuesday, September 28 | + | |[[#Tuesday, September 28|28]] |
- | |[[#Wednesday, September 29 | + | |[[#Wednesday, September 29|29]] |
- | |[[#Thursday, September 30 | + | |[[#Thursday, September 30|30]] |
| | | | ||
| | | | ||
Line 298: | Line 298: | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
=Abstract= | =Abstract= | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/July12|Monday, July 12 | + | ===[[Team:HokkaidoU_Japan/Notebook/July12|Monday, July 12]]=== |
* Our first experiment, transformation of BioBrick devices. | * Our first experiment, transformation of BioBrick devices. | ||
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/July21|Wednesday, July 21 | + | ===[[Team:HokkaidoU_Japan/Notebook/July21|Wednesday, July 21]]=== |
* Preparation of competent cells | * Preparation of competent cells | ||
- | * Single colony isolation of ''E. coli'' which had been transformed on Monday, July 12 | + | * Single colony isolation of ''E. coli'' which had been transformed on Monday, July 12 |
- | ===[[Team:HokkaidoU_Japan/Notebook/July26|Monday, July 26 | + | ===[[Team:HokkaidoU_Japan/Notebook/July26|Monday, July 26]]=== |
* Cultivation of transformed ''E. coli'' for the next day's miniprep | * Cultivation of transformed ''E. coli'' for the next day's miniprep | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/July27|Tuesday, July 27 | + | ===[[Team:HokkaidoU_Japan/Notebook/July27|Tuesday, July 27]]=== |
* Miniprep | * Miniprep | ||
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August2|Monday, August 2 | + | ===[[Team:HokkaidoU_Japan/Notebook/August2|Monday, August 2]]=== |
* Restriction enzyme digestion of plasmids which had been purified by miniprep | * Restriction enzyme digestion of plasmids which had been purified by miniprep | ||
* Electrophoresis assay | * Electrophoresis assay | ||
- | ===Tuesday, August 3 | + | ===Tuesday, August 3=== |
- | ===Wednesday, August 4 | + | ===Wednesday, August 4=== |
- | ===Thursday, August 5 | + | ===Thursday, August 5=== |
- | ===Friday, August 6 | + | ===Friday, August 6=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August9|Monday, August 9 | + | ===[[Team:HokkaidoU_Japan/Notebook/August9|Monday, August 9]]=== |
* Initial amplification of the BioBrick parts (BBa_I14032 "2-11P", BBa_F2621 "2-21H", BBa_K098995 "3-1E" and BBa_E1010 "1-18F") that are used in the construction of concentration-sensitive ''E. coli and heat-sensitive ''E. coli | * Initial amplification of the BioBrick parts (BBa_I14032 "2-11P", BBa_F2621 "2-21H", BBa_K098995 "3-1E" and BBa_E1010 "1-18F") that are used in the construction of concentration-sensitive ''E. coli and heat-sensitive ''E. coli | ||
* These are preliminary experiments before starting the main project | * These are preliminary experiments before starting the main project | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August10|Tuesday, August 10 | + | ===[[Team:HokkaidoU_Japan/Notebook/August10|Tuesday, August 10]]=== |
* PCR amplification of the other parts (BBa_F1610 "2-24G", BBa_B0034 "1-2M", BBa_B0015 "1-23L" and BBa_K098995 "3-1E") and electrophoresis to confirm | * PCR amplification of the other parts (BBa_F1610 "2-24G", BBa_B0034 "1-2M", BBa_B0015 "1-23L" and BBa_K098995 "3-1E") and electrophoresis to confirm | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August11|Wednesday, August 11 | + | ===[[Team:HokkaidoU_Japan/Notebook/August11|Wednesday, August 11]]=== |
* Preparation for the next day's miniprep | * Preparation for the next day's miniprep | ||
* Estimation of enzyme activity | * Estimation of enzyme activity | ||
* Preparation of the glycerol stocks | * Preparation of the glycerol stocks | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August12|Thursday, August 12 | + | ===[[Team:HokkaidoU_Japan/Notebook/August12|Thursday, August 12]]=== |
* Miniprep (1-18F, 2-21H and 2-11P) | * Miniprep (1-18F, 2-21H and 2-11P) | ||
* Electrophoresis of the DNA which had been amplified via PCR and miniprep | * Electrophoresis of the DNA which had been amplified via PCR and miniprep | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August13|Friday, August 13 | + | ===[[Team:HokkaidoU_Japan/Notebook/August13|Friday, August 13]]=== |
* PCR amplification of the DNA that we couldn't obtain via miniprep previous day(1-18F) | * PCR amplification of the DNA that we couldn't obtain via miniprep previous day(1-18F) | ||
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August16|Monday, August 16 | + | ===[[Team:HokkaidoU_Japan/Notebook/August16|Monday, August 16]]=== |
* Measurement of restriction enzyme activity | * Measurement of restriction enzyme activity | ||
* Restriction enzyme digestion of the parts(3-1E, 1-2M, 1-18F and 1-23L) and the vector(pSB1C3) | * Restriction enzyme digestion of the parts(3-1E, 1-2M, 1-18F and 1-23L) and the vector(pSB1C3) | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August17|Tuesday, August 17 | + | ===[[Team:HokkaidoU_Japan/Notebook/August17|Tuesday, August 17]]=== |
* Purification of the DNA solutions via gel extraction | * Purification of the DNA solutions via gel extraction | ||
* Preparation of agar medium containing 35 ug/mL chloramphenicol | * Preparation of agar medium containing 35 ug/mL chloramphenicol | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August18|Wednesday, August 18 | + | ===[[Team:HokkaidoU_Japan/Notebook/August18|Wednesday, August 18]]=== |
* Digestion and gel extraction of 1-2M (retry) | * Digestion and gel extraction of 1-2M (retry) | ||
* 3 piece ligation of 1-18F, 1-23L and pSB1C3 | * 3 piece ligation of 1-18F, 1-23L and pSB1C3 | ||
* Transformation | * Transformation | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August19|Thursday, August 19 | + | ===[[Team:HokkaidoU_Japan/Notebook/August19|Thursday, August 19]]=== |
* 3 piece ligation of 3-1E (heat sensor), 1-2M (ribosome binding site) and pSB1C3 (vector) | * 3 piece ligation of 3-1E (heat sensor), 1-2M (ribosome binding site) and pSB1C3 (vector) | ||
* Ligation that uses only vector pSB1C3 to estimate its efficiency | * Ligation that uses only vector pSB1C3 to estimate its efficiency | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August20|Friday, August 20 | + | ===[[Team:HokkaidoU_Japan/Notebook/August20|Friday, August 20]]=== |
* PCR amplification of pSB1A3, pSB1C3 and pSB1T3 | * PCR amplification of pSB1A3, pSB1C3 and pSB1T3 | ||
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August23|Monday, August 23 | + | ===[[Team:HokkaidoU_Japan/Notebook/August23|Monday, August 23]]=== |
* PCR amplification of pSB1A3, pSB1C3 and pSB1T3 (with some changes in protocols) | * PCR amplification of pSB1A3, pSB1C3 and pSB1T3 (with some changes in protocols) | ||
* PCR amplification of BioBrick parts using new primers | * PCR amplification of BioBrick parts using new primers | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August24|Tuesday, August 24 | + | ===[[Team:HokkaidoU_Japan/Notebook/August24|Tuesday, August 24]]=== |
* Electrophoresis of PCR products that had been amplified using new primers | * Electrophoresis of PCR products that had been amplified using new primers | ||
* Examination of two ligation kits | * Examination of two ligation kits | ||
Line 373: | Line 373: | ||
* Transformation of 1-3A (RFP reporter with chloramphenicol resistance) to evaluate the medium | * Transformation of 1-3A (RFP reporter with chloramphenicol resistance) to evaluate the medium | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August25|Wednesday, August 25 | + | ===[[Team:HokkaidoU_Japan/Notebook/August25|Wednesday, August 25]]=== |
* Estimation of the amount of 1-3A DNA that could transform and grow cells on the chloramphenicol medium | * Estimation of the amount of 1-3A DNA that could transform and grow cells on the chloramphenicol medium | ||
* Ethanol precipitation to condense the pSB1C3 DNA solution, and its digestion and ligation | * Ethanol precipitation to condense the pSB1C3 DNA solution, and its digestion and ligation | ||
Line 380: | Line 380: | ||
* Digestion of PCR products that had been amplified by using new primers | * Digestion of PCR products that had been amplified by using new primers | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August26|Thursday, August 26 | + | ===[[Team:HokkaidoU_Japan/Notebook/August26|Thursday, August 26]]=== |
* Electriphoresis to check whether ligation had been successful | * Electriphoresis to check whether ligation had been successful | ||
* Digestion of PCR products that had been amplified using new primers (with reconstruction of reaction system) | * Digestion of PCR products that had been amplified using new primers (with reconstruction of reaction system) | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August27|Friday, August 27 | + | ===[[Team:HokkaidoU_Japan/Notebook/August27|Friday, August 27]]=== |
* Ligation of 1-1A (RFP reporter device) into pSB1C3 and its transformation | * Ligation of 1-1A (RFP reporter device) into pSB1C3 and its transformation | ||
* Retry of 3 piece ligation which was done on August 19th and 20th | * Retry of 3 piece ligation which was done on August 19th and 20th | ||
Line 390: | Line 390: | ||
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August30|Monday, August 30 | + | ===[[Team:HokkaidoU_Japan/Notebook/August30|Monday, August 30]]=== |
* Measurement of restriction enzyme activity using highly purified pUC119 | * Measurement of restriction enzyme activity using highly purified pUC119 | ||
* Digestion of PCR products that had been amplified using new primers | * Digestion of PCR products that had been amplified using new primers | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/August31|Tuesday, August 31 | + | ===[[Team:HokkaidoU_Japan/Notebook/August31|Tuesday, August 31]]=== |
* Gel extraction, ligation and transformation of pUC119 | * Gel extraction, ligation and transformation of pUC119 | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September1|Wednesday, September 1 | + | ===[[Team:HokkaidoU_Japan/Notebook/September1|Wednesday, September 1]]=== |
* PCR amplification of 1-5A (RFP reporter) | * PCR amplification of 1-5A (RFP reporter) | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September2|Thursday, September 2 | + | ===[[Team:HokkaidoU_Japan/Notebook/September2|Thursday, September 2]]=== |
* Digestion, ligation and Transformation of RFP reporter with pSB1C3 or pUC119 | * Digestion, ligation and Transformation of RFP reporter with pSB1C3 or pUC119 | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September3|Friday, September 3 | + | ===[[Team:HokkaidoU_Japan/Notebook/September3|Friday, September 3]]=== |
* Colony PCR of ''E. coli'' transformed on previous day | * Colony PCR of ''E. coli'' transformed on previous day | ||
* PCR amplification of 1-3A (RFP reporter) | * PCR amplification of 1-3A (RFP reporter) | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September4|Saturday, September 4 | + | ===[[Team:HokkaidoU_Japan/Notebook/September4|Saturday, September 4]]=== |
* PCR amplification of 1-5A (RFP reporter) | * PCR amplification of 1-5A (RFP reporter) | ||
* Estimation of the amount of 1-3A PCR product | * Estimation of the amount of 1-3A PCR product | ||
Line 413: | Line 413: | ||
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September6|Monday, September 6 | + | ===[[Team:HokkaidoU_Japan/Notebook/September6|Monday, September 6]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September7|Tuesday, September 7 | + | ===[[Team:HokkaidoU_Japan/Notebook/September7|Tuesday, September 7]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September8|Wednesday, September 8 | + | ===[[Team:HokkaidoU_Japan/Notebook/September8|Wednesday, September 8]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September9|Thursday, September 9 | + | ===[[Team:HokkaidoU_Japan/Notebook/September9|Thursday, September 9]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September10|Friday, September 10 | + | ===[[Team:HokkaidoU_Japan/Notebook/September10|Friday, September 10]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September13|Monday, September 13 | + | ===[[Team:HokkaidoU_Japan/Notebook/September13|Monday, September 13]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September14|Tuesday, September 14 | + | ===[[Team:HokkaidoU_Japan/Notebook/September14|Tuesday, September 14]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September15|Wednesday, September 15 | + | ===[[Team:HokkaidoU_Japan/Notebook/September15|Wednesday, September 15]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September16|Thursday, September 16 | + | ===[[Team:HokkaidoU_Japan/Notebook/September16|Thursday, September 16]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September17|Friday, September 17 | + | ===[[Team:HokkaidoU_Japan/Notebook/September17|Friday, September 17]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September20|Monday, September 20 | + | ===[[Team:HokkaidoU_Japan/Notebook/September20|Monday, September 20]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September21|Tuesday, September 21 | + | ===[[Team:HokkaidoU_Japan/Notebook/September21|Tuesday, September 21]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September22|Wednesday, September 22 | + | ===[[Team:HokkaidoU_Japan/Notebook/September22|Wednesday, September 22]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September23|Thursday, September 23 | + | ===[[Team:HokkaidoU_Japan/Notebook/September23|Thursday, September 23]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September24|Friday, September 24 | + | ===[[Team:HokkaidoU_Japan/Notebook/September24|Friday, September 24]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/September27|Monday, September 27 | + | ===[[Team:HokkaidoU_Japan/Notebook/September27|Monday, September 27]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September28|Tuesday, September 28 | + | ===[[Team:HokkaidoU_Japan/Notebook/September28|Tuesday, September 28]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September29|Wednesday, September 29 | + | ===[[Team:HokkaidoU_Japan/Notebook/September29|Wednesday, September 29]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/September30|Thursday, September 30 | + | ===[[Team:HokkaidoU_Japan/Notebook/September30|Thursday, September 30]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October1|Friday, October 1 | + | ===[[Team:HokkaidoU_Japan/Notebook/October1|Friday, October 1]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/October4|Monday, October 4 | + | ===[[Team:HokkaidoU_Japan/Notebook/October4|Monday, October 4]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October5|Tuesday, October 5 | + | ===[[Team:HokkaidoU_Japan/Notebook/October5|Tuesday, October 5]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October6|Wednesday, October 6 | + | ===[[Team:HokkaidoU_Japan/Notebook/October6|Wednesday, October 6]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October7|Thursday, October 7 | + | ===[[Team:HokkaidoU_Japan/Notebook/October7|Thursday, October 7]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October8|Friday, October 8 | + | ===[[Team:HokkaidoU_Japan/Notebook/October8|Friday, October 8]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/October11|Monday, October 11 | + | ===[[Team:HokkaidoU_Japan/Notebook/October11|Monday, October 11]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October12|Tuesday, October 12 | + | ===[[Team:HokkaidoU_Japan/Notebook/October12|Tuesday, October 12]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October13|Wednesday, October 13 | + | ===[[Team:HokkaidoU_Japan/Notebook/October13|Wednesday, October 13]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October14|Thursday, October 14 | + | ===[[Team:HokkaidoU_Japan/Notebook/October14|Thursday, October 14]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October15|Friday, October 15 | + | ===[[Team:HokkaidoU_Japan/Notebook/October15|Friday, October 15]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/October18|Monday, October 18 | + | ===[[Team:HokkaidoU_Japan/Notebook/October18|Monday, October 18]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October19|Tuesday, October 19 | + | ===[[Team:HokkaidoU_Japan/Notebook/October19|Tuesday, October 19]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October20|Wednesday, October 20 | + | ===[[Team:HokkaidoU_Japan/Notebook/October20|Wednesday, October 20]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October21|Thursday, October 21 | + | ===[[Team:HokkaidoU_Japan/Notebook/October21|Thursday, October 21]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October22|Friday, October 22 | + | ===[[Team:HokkaidoU_Japan/Notebook/October22|Friday, October 22]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/October25|Monday, October 25 | + | ===[[Team:HokkaidoU_Japan/Notebook/October25|Monday, October 25]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October26|Tuesday, October 26 | + | ===[[Team:HokkaidoU_Japan/Notebook/October26|Tuesday, October 26]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October27|Wednesday, October 27 | + | ===[[Team:HokkaidoU_Japan/Notebook/October27|Wednesday, October 27]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October28|Thursday, October 28 | + | ===[[Team:HokkaidoU_Japan/Notebook/October28|Thursday, October 28]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/October29|Friday, October 29 | + | ===[[Team:HokkaidoU_Japan/Notebook/October29|Friday, October 29]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/November1|Monday, November 1 | + | ===[[Team:HokkaidoU_Japan/Notebook/November1|Monday, November 1]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November2|Tuesday, November 2 | + | ===[[Team:HokkaidoU_Japan/Notebook/November2|Tuesday, November 2]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November3|Wednesday, November 3 | + | ===[[Team:HokkaidoU_Japan/Notebook/November3|Wednesday, November 3]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November4|Thursday, November 4 | + | ===[[Team:HokkaidoU_Japan/Notebook/November4|Thursday, November 4]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November5|Friday, November 5 | + | ===[[Team:HokkaidoU_Japan/Notebook/November5|Friday, November 5]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/November8|Monday, November 8 | + | ===[[Team:HokkaidoU_Japan/Notebook/November8|Monday, November 8]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November9|Tuesday, November 9 | + | ===[[Team:HokkaidoU_Japan/Notebook/November9|Tuesday, November 9]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November10|Wednesday, November 10 | + | ===[[Team:HokkaidoU_Japan/Notebook/November10|Wednesday, November 10]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November11|Thursday, November 11 | + | ===[[Team:HokkaidoU_Japan/Notebook/November11|Thursday, November 11]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November12|Friday, November 12 | + | ===[[Team:HokkaidoU_Japan/Notebook/November12|Friday, November 12]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/November15|Monday, November 15 | + | ===[[Team:HokkaidoU_Japan/Notebook/November15|Monday, November 15]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November16|Tuesday, November 16 | + | ===[[Team:HokkaidoU_Japan/Notebook/November16|Tuesday, November 16]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November17|Wednesday, November 17 | + | ===[[Team:HokkaidoU_Japan/Notebook/November17|Wednesday, November 17]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November18|Thursday, November 18 | + | ===[[Team:HokkaidoU_Japan/Notebook/November18|Thursday, November 18]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November19|Friday, November 19 | + | ===[[Team:HokkaidoU_Japan/Notebook/November19|Friday, November 19]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/November22|Monday, November 22 | + | ===[[Team:HokkaidoU_Japan/Notebook/November22|Monday, November 22]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November23|Tuesday, November 23 | + | ===[[Team:HokkaidoU_Japan/Notebook/November23|Tuesday, November 23]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November24|Wednesday, November 24 | + | ===[[Team:HokkaidoU_Japan/Notebook/November24|Wednesday, November 24]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November25|Thursday, November 25 | + | ===[[Team:HokkaidoU_Japan/Notebook/November25|Thursday, November 25]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November26|Friday, November 26 | + | ===[[Team:HokkaidoU_Japan/Notebook/November26|Friday, November 26]]=== |
---- | ---- | ||
- | ===[[Team:HokkaidoU_Japan/Notebook/November29|Monday, November 29 | + | ===[[Team:HokkaidoU_Japan/Notebook/November29|Monday, November 29]]=== |
- | ===[[Team:HokkaidoU_Japan/Notebook/November30|Tuesday, November 30 | + | ===[[Team:HokkaidoU_Japan/Notebook/November30|Tuesday, November 30]]=== |
Revision as of 05:23, 11 September 2010
Calendar
July | ||||||
SUN | MON | TUE | WED | THU | FRI | SAT |
---|---|---|---|---|---|---|
1 | 2 | 3 | ||||
4 | 5 | 6 | 7 | 8 | 9 | 10 |
11 | 12 | 13 | 14 | 15 | 16 | 17 |
18 | 19 | 20 | 21 | 22 | 23 | 24 |
25 | 26 | 27 | 28 | 29 | 30 | 31 |
August | ||||||
SUN | MON | TUE | WED | THU | FRI | SAT |
---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 |
8 | 9 | 10 | 11 | 12 | 13 | 14 |
15 | 16 | 17 | 18 | 19 | 20 | 21 |
22 | 23 | 24 | 25 | 26 | 27 | 28 |
29 | 30 | 31 |
September | ||||||
SUN | MON | TUE | WED | THU | FRI | SAT |
---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | |||
5 | 6 | 7 | 8 | 9 | 10 | 11 |
12 | 13 | 14 | 15 | 16 | 17 | 18 |
19 | 20 | 21 | 22 | 23 | 24 | 25 |
26 | 27 | 28 | 29 | 30 |
October | ||||||
SUN | MON | TUE | WED | THU | FRI | SAT |
---|---|---|---|---|---|---|
1 | 2 | |||||
3 | 4 | 5 | 6 | 7 | 8 | 9 |
10 | 11 | 12 | 13 | 14 | 15 | 16 |
17 | 18 | 19 | 20 | 21 | 22 | 23 |
24 | 25 | 26 | 27 | 28 | 29 | 30 |
31 |
November | ||||||
SUN | MON | TUE | WED | THU | FRI | SAT |
---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | |
7 | 8 | 9 | 10 | 11 | 12 | 13 |
14 | 15 | 16 | 17 | 18 | 19 | 20 |
21 | 22 | 23 | 24 | 25 | 26 | 27 |
28 | 29 | 30 | ||||
Abstract
Monday, July 12
- Our first experiment, transformation of BioBrick devices.
Wednesday, July 21
- Preparation of competent cells
- Single colony isolation of E. coli which had been transformed on Monday, July 12
Monday, July 26
- Cultivation of transformed E. coli for the next day's miniprep
Tuesday, July 27
- Miniprep
Monday, August 2
- Restriction enzyme digestion of plasmids which had been purified by miniprep
- Electrophoresis assay
Tuesday, August 3
Wednesday, August 4
Thursday, August 5
Friday, August 6
Monday, August 9
- Initial amplification of the BioBrick parts (BBa_I14032 "2-11P", BBa_F2621 "2-21H", BBa_K098995 "3-1E" and BBa_E1010 "1-18F") that are used in the construction of concentration-sensitive E. coli and heat-sensitive E. coli
- These are preliminary experiments before starting the main project
Tuesday, August 10
- PCR amplification of the other parts (BBa_F1610 "2-24G", BBa_B0034 "1-2M", BBa_B0015 "1-23L" and BBa_K098995 "3-1E") and electrophoresis to confirm
Wednesday, August 11
- Preparation for the next day's miniprep
- Estimation of enzyme activity
- Preparation of the glycerol stocks
Thursday, August 12
- Miniprep (1-18F, 2-21H and 2-11P)
- Electrophoresis of the DNA which had been amplified via PCR and miniprep
Friday, August 13
- PCR amplification of the DNA that we couldn't obtain via miniprep previous day(1-18F)
Monday, August 16
- Measurement of restriction enzyme activity
- Restriction enzyme digestion of the parts(3-1E, 1-2M, 1-18F and 1-23L) and the vector(pSB1C3)
Tuesday, August 17
- Purification of the DNA solutions via gel extraction
- Preparation of agar medium containing 35 ug/mL chloramphenicol
Wednesday, August 18
- Digestion and gel extraction of 1-2M (retry)
- 3 piece ligation of 1-18F, 1-23L and pSB1C3
- Transformation
Thursday, August 19
- 3 piece ligation of 3-1E (heat sensor), 1-2M (ribosome binding site) and pSB1C3 (vector)
- Ligation that uses only vector pSB1C3 to estimate its efficiency
Friday, August 20
- PCR amplification of pSB1A3, pSB1C3 and pSB1T3
Monday, August 23
- PCR amplification of pSB1A3, pSB1C3 and pSB1T3 (with some changes in protocols)
- PCR amplification of BioBrick parts using new primers
Tuesday, August 24
- Electrophoresis of PCR products that had been amplified using new primers
- Examination of two ligation kits
- Electrophoresis assay of miscellaneous DNA solutions
- Transformation of 1-3A (RFP reporter with chloramphenicol resistance) to evaluate the medium
Wednesday, August 25
- Estimation of the amount of 1-3A DNA that could transform and grow cells on the chloramphenicol medium
- Ethanol precipitation to condense the pSB1C3 DNA solution, and its digestion and ligation
Ligationはお互いそれともパーツと?
ベクター同士.ご自分の記録をご確認ください.
- Digestion of PCR products that had been amplified by using new primers
Thursday, August 26
- Electriphoresis to check whether ligation had been successful
- Digestion of PCR products that had been amplified using new primers (with reconstruction of reaction system)
Friday, August 27
- Ligation of 1-1A (RFP reporter device) into pSB1C3 and its transformation
- Retry of 3 piece ligation which was done on August 19th and 20th
- Ligation of vectors to each other
Monday, August 30
- Measurement of restriction enzyme activity using highly purified pUC119
- Digestion of PCR products that had been amplified using new primers
Tuesday, August 31
- Gel extraction, ligation and transformation of pUC119
Wednesday, September 1
- PCR amplification of 1-5A (RFP reporter)
Thursday, September 2
- Digestion, ligation and Transformation of RFP reporter with pSB1C3 or pUC119
Friday, September 3
- Colony PCR of E. coli transformed on previous day
- PCR amplification of 1-3A (RFP reporter)
Saturday, September 4
- PCR amplification of 1-5A (RFP reporter)
- Estimation of the amount of 1-3A PCR product