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Team:Cambridge/Software Tools
From 2010.igem.org
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===Codon optimisation=== | ===Codon optimisation=== | ||
[http://genedesign.thruhere.net/cgi-bin/gd/gdCodJug.cgi Codon juggling tool, good compromise?] | [http://genedesign.thruhere.net/cgi-bin/gd/gdCodJug.cgi Codon juggling tool, good compromise?] | ||
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[http://www.genscript.com/cgi-bin/tools/rare_codon_analysis Rare codon analysis] | [http://www.genscript.com/cgi-bin/tools/rare_codon_analysis Rare codon analysis] | ||
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[http://genomes.urv.cat/OPTIMIZER/ OPTIMIZER] | [http://genomes.urv.cat/OPTIMIZER/ OPTIMIZER] | ||
Latest revision as of 11:41, 18 August 2010
Logistics: Software Tools
Online Tools
Primer design
[http://voigtlab.ucsf.edu/ruby/assembly Primer design for Gibson]
Calculating nucleic acid interactions
[http://mfold.bioinfo.rpi.edu/ Cis-folding of DNA and Rcd (for primer design + Rcd)]
[http://dinamelt.bioinfo.rpi.edu/hybrid2.php Trans interactions (e.g. Rcd)]
Codon optimisation
[http://genedesign.thruhere.net/cgi-bin/gd/gdCodJug.cgi Codon juggling tool, good compromise?]
[http://www.genscript.com/cgi-bin/tools/rare_codon_analysis Rare codon analysis]
[http://genomes.urv.cat/OPTIMIZER/ OPTIMIZER]
Downloadable tools
[http://www.clcbio.com/ CLC Main Workbench]
[http://dinamelt.bioinfo.rpi.edu/download.php UNA Fold for linux] offline version of DINAMelt, complex
