Team:KAIST-Korea/Project/Modeling

From 2010.igem.org

(Difference between revisions)

Revision as of 09:40, 5 August 2010

Single chain antibody structural alignment

Protocol

Data source

Single chain antibody synthesis

Structure Prediction

Structure Alignment

Result

Structural alignment results of single chain antibodies with FGF binding domain

Name	Core Residues	Core RMSD	Raw Score	P-value
2VXT	95	2.676	84.306	0.000222
2VXU	98	2.563	92.118	0.0000823
2VXV	77	2.64	52.269	0.0644
2ZKH	96	2.855	93.411	0.001
3AAZ	84	4.197	68.078	0.0642
3D69	137	12.224	98.134	0.00541
3EO9	80	2.282	84.665	0.00295
3EOA	116	10.402	98.544	0.0547
3EOB	68	4.685	56.357	0.3753
3EYV	85	4.704	66.669	0.1653
3FMG	81	2.629	73.298	0.0129
3FOG	90	7.243	74.031	0.0785
3G6D	72	4.403	69.774	0.1281
3GBM	119	10.331	115.929	0.0314
3GBN	77	2.788	57.204	0.0592
3GHB	101	12.861	81.189	0.3984
3GHE	96	3.302	109.208	0.00117
3GI8	127	6.837	113.467	0.00038
3GI9	52	3.534	43.56	0.166
3GIZ	89	8.217	68.702	0.3172
3GK8	91	6.84	84.048	0.00811
3GKW	74	3.205	47.096	0.1215
3GNM	135	4.739	103.812	0.00000297
3GO1	103	8.842	77.631	0.2587
3GRW	107	9.819	108.405	0.0449
3H42	69	4.389	59.165	0.3421
3HC0	67	3.065	40.982	0.1028
3HC3	67	3.173	49.109	0.0944
3HC4	36	1.998	42.538	0.206
3HI5	77	3.222	58.096	0.1832
3HI6	81	3.646	63.526	0.0394
3HMW	83	4.159	62.598	0.1976
3HMX	70	5.215	62.814	0.2228
3HNT	84	2.62	74.666	0.00118
3HNV	84	2.998	77.17	0.00374
3HR5	78	4.158	58.026	0.2978
3I50	65	2.206	52.252	0.1156
3I9G	84	5.026	64.155	0.1506
3IU3	75	3.192	56.006	0.2552
3IXT	78	2.951	68.627	0.0378
3KDM	87	4.273	65.722	0.1683
3KS0	81	3.039	55.562	0.0192
3KYK	88	4.728	68.681	0.1016
3KYM	85	6.52	66.102	0.5135
3L1O	93	2.545	85.909	0.0014
3L5W	89	4.925	72.178	0.0637
3L5X	88	4.796	65.262	0.1111
3L5Y	64	4.689	65.227	0.2007
3L95	73	5.105	70.312	0.0515
3LMJ	76	2.699	56.627	0.0237
3LQA	75	8.371	58.374	0.8315
3LS4	79	2.458	72.68	0.00694
3LS5	81	2.443	73.043	0.0014
3LZF	96	2.468	93.292	0.00155
3MLR	71	2.574	64.979	0.0165
3MLS	75	2.534	57.386	0.0202
3MLU	127	10.025	73.766	0.0305
3MLV	75	2.454	62.321	0.0218
3MLW	83	8.94	59.029	0.4846
3MLX	118	11.485	105.391	0.0961
3MLY	84	4.704	63.962	0.1023
3MLZ	82	3.995	64.563	0.123
3MUG	79	2.827	68.72	0.0223
3MXV	125	10.857	121.911	0.01
3MXW	102	11.262	78.348	0.4213
16A1	86	2.139	89.893	0.00443

Structural alignment results of random short proteins with FGF binding domain

@@ Line 404: / Line 404: @@
 | 0.4213
 |--bgcolor="#C3C4D8"
-| AntiTB
+| 16A1
 | 86
 | 2.139
@@ Line 411: / Line 411: @@
 |-
 |}
 ====Structural alignment results of random short proteins with FGF binding domain ====