Team:Johns Hopkins

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Johns Hopkins University Seal

Genetically engineered Saccharomyces cerevisiae that is responsive to voltage signals at a transcriptional level.

Using our specifically designed CRZ1 binding elements in tandem with fluorescent reporter genes, we characterized calcineurin-CRZ1 mediated calcium response pathway in yeast. In doing so we have taken the first step in creating an interface between cellular systems and computers by allowing cells to respond to voltage signals, the language of computers.

Possible applications:

We see large scale applications in synthetic biology, for the integration of computer controlled voltage signals into gene expression control. We want to create a system where genes can be turned on and off with voltage signals that be delivered at precise and arbitrary intervals by computers, without having to deal with a hundred different and potentially costly chemical reagents. In effect, we want to make biology more easily engineerable.
We are looking into inducing the URA3 gene (required for uracil synthesis) in a URA3 null mutant to create yeast cells whose growth is dependent on a voltage signal. For example, this might take the form of a system whereby a SMS "text" message could be sent to a computer, which would stop electrostimulating cells, turning off uracil synthesis. This way, a text message could effectively "turn off" cells without the need to even come into the lab!

We imagine that a voltage activated transcriptional response might be very useful in cardiovascular research. For example, it might be used to model arrhythmias in cardiac tissue, because using our system of voltage (or calcium influx) activated transcription it might be possible to weed out cells displaying action potentials, like live muscle cells that are contracting. We hypothesize this could be done by causing a selectable transcriptional response to the calcium influx of the action potential.

We believe that the concept of voltage controlled transcription in yeast might have large industrial applications, specifically in the field of fermentation. By designing yeast that are taken in and out of the growth cycle by simple voltage signals we would be able to dynamically control, for example, yeast population density and hence fermentation rates in bioreactors. In theory, however, this voltage control could be tuned to modulate nearly any cellular behavior in any organism with a nucleus.

Team: We are a team of 9 undergraduate students deeply interested in synthetic biology. We hail from a variety of disciplines including, chemistry, biology and engineering. We’re a fresh new team with varying levels of experience united by our passion for science.

Our Accomplishments
We have...

Extended previous work on voltage sensitivity (Valencia 2009) in S. cerevisiae, bringing the response from the biochemical domain into the transcriptional.
Constructed a library of 7 voltage-activated yeast upstream activation sequences with varying sensitivity.
Characterized two full voltage-activated promoters for yeast.
Developed a model to describe the transcriptional response to voltage of our system.
Successfully leveraged post-translational modification machinery, namely de-phosphorylation of Crz1 by calcineurin, to initiate a transcriptional response.
Fabricated a highly accurate microfluidic electro-stimulation setup using gold electrodes on a silicone wafer and are currently in the process of refining the fabrication technique.

JHU iGEM 2010

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 <big>'''Possible applications:'''</big>
-*We see large scale applications in synthetic biology, for the integration of computer controlled voltage signals into gene expression control. We want to create a system where genes can be turned on and off with voltage signals that be delivered at precise intervals by computers, without having to deal with a hundred different and potentially costly chemical reagents. In effect, we want to make biology more easily engineerable.
+*We see large scale applications in synthetic biology, for the integration of computer controlled voltage signals into gene expression control. We want to create a system where genes can be turned on and off with voltage signals that be delivered at precise and arbitrary intervals by computers, without having to deal with a hundred different and potentially costly chemical reagents. In effect, we want to make biology more easily engineerable.
-*We are looking into creating a URA3 gene (required for uracil synthesis) downstream of our CDRE equipped promoter region, to create yeast cells whose growth is dependent on this gene being transcribed. For example, this might take the form of a system whereby a SMS "text" message could be sent to a computer, which would electrostimulate cells, removing them from their growth cycle, without any need even to come into the lab!
+*We are looking into inducing the URA3 gene (required for uracil synthesis) in a URA3 null mutant to create yeast cells whose growth is dependent on a voltage signal. For example, this might take the form of a system whereby a SMS "text" message could be sent to a computer, which would stop electrostimulating cells, turning off uracil synthesis.  This way, a text message could effectively "turn off" cells without the need to even come into the lab!
-*We envisage a voltage activated transcriptional response to be very useful in cardiovascular research for example modeling arrhythmias in cardiac tissue, because using our system of voltage (or calcium influx) activated transcription it is possible to weed out cells that display action potentials, that is live muscle cells that are contracting. We hypothesize this could be done by causing a selectable transcriptional response to the calcium influx of the action potential.
+*We imagine that a voltage activated transcriptional response might be very useful in cardiovascular research.  For example, it might be used to model arrhythmias in cardiac tissue, because using our system of voltage (or calcium influx) activated transcription it might be possible to weed out cells displaying action potentials, like live muscle cells that are contracting. We hypothesize this could be done by causing a selectable transcriptional response to the calcium influx of the action potential.
-*We believe that the concept of voltage controlled transcription in yeast has large industrial applications, specifically in the field of fermentation. By designing yeast that are taken in and out of the growth cycle by simple voltage signals we would be able to dynamically control yeast population density and hence fermentation rates in bioreactors. We hypothesize that this could be done by having a gene required for growth downstream of our CDRE containing promoter in a yeast strain where this same gene is knocked out.
+*We believe that the concept of voltage controlled transcription in yeast might have large industrial applications, specifically in the field of fermentation. By designing yeast that are taken in and out of the growth cycle by simple voltage signals we would be able to dynamically control, for example, yeast population density and hence fermentation rates in bioreactors. In theory, however, this voltage control could be tuned to modulate nearly any cellular behavior in any organism with a nucleus.
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