Team:Nevada/Interpolated Data
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== Interpolated Data Set == | == Interpolated Data Set == | ||
- | + | {| border="1" | |
+ | |Raw Data | ||
+ | |ICE1 | ||
+ | |DREB1A | ||
+ | |DREB1B | ||
+ | |DREB1C | ||
+ | |rd29A | ||
+ | |ZAT6 | ||
+ | |RAP2.1 | ||
+ | |RAP2.6 | ||
+ | |- | ||
+ | |t0 | ||
+ | |1358.1 | ||
+ | |96.6 | ||
+ | |24.5 | ||
+ | |69.4 | ||
+ | |1509.2 | ||
+ | |145.3 | ||
+ | |100.4 | ||
+ | |58.5 | ||
+ | |- | ||
+ | |t1 | ||
+ | |1450.6 | ||
+ | |4600.5 | ||
+ | |3748.3 | ||
+ | |9051.6 | ||
+ | |2125.8 | ||
+ | |455.4 | ||
+ | |78.4 | ||
+ | |58.2 | ||
+ | |- | ||
+ | |t2 | ||
+ | |1515 | ||
+ | |6617.4 | ||
+ | |5072.8 | ||
+ | |12724.1 | ||
+ | |5330.4 | ||
+ | |965.3 | ||
+ | |166.6 | ||
+ | |55.8 | ||
+ | |- | ||
+ | |t3 | ||
+ | |1547.9 | ||
+ | |6181.2 | ||
+ | |4099 | ||
+ | |11249.3 | ||
+ | |10644.4 | ||
+ | |1620.6 | ||
+ | |357.8 | ||
+ | |52.3 | ||
+ | |- | ||
+ | |t4 | ||
+ | |1566.7 | ||
+ | |5400.5 | ||
+ | |2970.9 | ||
+ | |9273.8 | ||
+ | |15161.9 | ||
+ | |2168.8 | ||
+ | |549.6 | ||
+ | |51.6 | ||
+ | |- | ||
+ | |t5 | ||
+ | |1576.1 | ||
+ | |4709.9 | ||
+ | |2112.2 | ||
+ | |7731.3 | ||
+ | |18402.6 | ||
+ | |2571.8 | ||
+ | |722.5 | ||
+ | |53.9 | ||
+ | |- | ||
+ | |t6 | ||
+ | |1577.2 | ||
+ | |4098.1 | ||
+ | |1489.2 | ||
+ | |6567.6 | ||
+ | |20526.3 | ||
+ | |2847.7 | ||
+ | |878.6 | ||
+ | |59 | ||
+ | |- | ||
+ | |t7 | ||
+ | |1571.2 | ||
+ | |3554 | ||
+ | |1068.2 | ||
+ | |5728.6 | ||
+ | |21692.4 | ||
+ | |3014.6 | ||
+ | |1020.5 | ||
+ | |66.4 | ||
+ | |- | ||
+ | |t8 | ||
+ | |1559.4 | ||
+ | |3066.1 | ||
+ | |815.6 | ||
+ | |5160.2 | ||
+ | |22060.6 | ||
+ | |3090.8 | ||
+ | |1150.5 | ||
+ | |75.8 | ||
+ | |- | ||
+ | |t9 | ||
+ | |1542.8 | ||
+ | |2623.4 | ||
+ | |697.7 | ||
+ | |4808.4 | ||
+ | |21790.5 | ||
+ | |3094.3 | ||
+ | |1271.1 | ||
+ | |86.8 | ||
+ | |- | ||
+ | |t10 | ||
+ | |1522.6 | ||
+ | |2214.4 | ||
+ | |680.8 | ||
+ | |4618.8 | ||
+ | |21041.6 | ||
+ | |3043.4 | ||
+ | |1384.4 | ||
+ | |98.9 | ||
+ | |- | ||
+ | |t11 | ||
+ | |1500.2 | ||
+ | |1828 | ||
+ | |731.3 | ||
+ | |4537.6 | ||
+ | |19973.6 | ||
+ | |2956.1 | ||
+ | |1493.7 | ||
+ | |111.8 | ||
+ | |- | ||
+ | |t12 | ||
+ | |1476.5 | ||
+ | |1452.8 | ||
+ | |815.4 | ||
+ | |4510.4 | ||
+ | |18745.9 | ||
+ | |2850.7 | ||
+ | |1599.3 | ||
+ | |125 | ||
+ | |- | ||
+ | |t13 | ||
+ | |1452.8 | ||
+ | |1077.6 | ||
+ | |899.5 | ||
+ | |4483.2 | ||
+ | |17518.2 | ||
+ | |2745.3 | ||
+ | |1705.5 | ||
+ | |138.3 | ||
+ | |- | ||
+ | |t14 | ||
+ | |1430.4 | ||
+ | |691.2 | ||
+ | |950 | ||
+ | |4402 | ||
+ | |16450.2 | ||
+ | |2658 | ||
+ | |1814.2 | ||
+ | |151.1 | ||
+ | |- | ||
+ | |t15 | ||
+ | |1410.2 | ||
+ | |282.2 | ||
+ | |933.1 | ||
+ | |4212.4 | ||
+ | |15701.3 | ||
+ | |2607.1 | ||
+ | |1927.5 | ||
+ | |163.2 | ||
+ | |} | ||
== Log Base 2 of Normalized Ratios == | == Log Base 2 of Normalized Ratios == |
Revision as of 06:40, 26 October 2010
Contents |
Interpolation Method
Natural cubic splines were made based on the four time points for each gene. This produced 3 splines per gene: one for the interval from 0 to 3 hours, the second from 3 to 6 hours and a final one for 6 to 24 hours. For all genes, the final spline was also used to extrapolate out to 30 hours, in order to get a sense of whether or not some of these genes may have a delayed response to freezing. 16 time points were taken from the 30-hour interpolated/extrapolated data at 2 hour intervals to produce this data set.
Interpolated Data Set
Raw Data | ICE1 | DREB1A | DREB1B | DREB1C | rd29A | ZAT6 | RAP2.1 | RAP2.6 |
t0 | 1358.1 | 96.6 | 24.5 | 69.4 | 1509.2 | 145.3 | 100.4 | 58.5 |
t1 | 1450.6 | 4600.5 | 3748.3 | 9051.6 | 2125.8 | 455.4 | 78.4 | 58.2 |
t2 | 1515 | 6617.4 | 5072.8 | 12724.1 | 5330.4 | 965.3 | 166.6 | 55.8 |
t3 | 1547.9 | 6181.2 | 4099 | 11249.3 | 10644.4 | 1620.6 | 357.8 | 52.3 |
t4 | 1566.7 | 5400.5 | 2970.9 | 9273.8 | 15161.9 | 2168.8 | 549.6 | 51.6 |
t5 | 1576.1 | 4709.9 | 2112.2 | 7731.3 | 18402.6 | 2571.8 | 722.5 | 53.9 |
t6 | 1577.2 | 4098.1 | 1489.2 | 6567.6 | 20526.3 | 2847.7 | 878.6 | 59 |
t7 | 1571.2 | 3554 | 1068.2 | 5728.6 | 21692.4 | 3014.6 | 1020.5 | 66.4 |
t8 | 1559.4 | 3066.1 | 815.6 | 5160.2 | 22060.6 | 3090.8 | 1150.5 | 75.8 |
t9 | 1542.8 | 2623.4 | 697.7 | 4808.4 | 21790.5 | 3094.3 | 1271.1 | 86.8 |
t10 | 1522.6 | 2214.4 | 680.8 | 4618.8 | 21041.6 | 3043.4 | 1384.4 | 98.9 |
t11 | 1500.2 | 1828 | 731.3 | 4537.6 | 19973.6 | 2956.1 | 1493.7 | 111.8 |
t12 | 1476.5 | 1452.8 | 815.4 | 4510.4 | 18745.9 | 2850.7 | 1599.3 | 125 |
t13 | 1452.8 | 1077.6 | 899.5 | 4483.2 | 17518.2 | 2745.3 | 1705.5 | 138.3 |
t14 | 1430.4 | 691.2 | 950 | 4402 | 16450.2 | 2658 | 1814.2 | 151.1 |
t15 | 1410.2 | 282.2 | 933.1 | 4212.4 | 15701.3 | 2607.1 | 1927.5 | 163.2 |
Log Base 2 of Normalized Ratios
Table
Boolean Values (Threshold of 3.5)
Table
Boolean Input Functions
- Link to ICE1 inputs
- Link to DREB1B inputs
- Link to DREB1C inputs
- Link to rd29A inputs
- Link to RAP2.6 inputs