Team:ETHZ Basel/Internal

From 2010.igem.org

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== Suggestions ==
 
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* https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Elsa'''
 
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first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
 
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<br>second paragraph: quite unclear, if possible, add more details & explain more
 
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<br>add a few sentences (and link them) regarding ARL & Safety
 
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
 
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50 &mu;m (?) high flow channel; remove question mark
 
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
 
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in second part of the page, 'cells with highest score'; define the score
 
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<br>clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
 
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Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.
 
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* https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
 
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added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?
 
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization 
 
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spacing, subheadings & some bullet points); suggesting more images for the user experience part
 
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
 
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Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
 
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* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria
 
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check with biology to keep it updated (check list)
 
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* https://2010.igem.org/Team:ETHZ_Basel/Team
 
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Add link to Biozentrum Unibas.
 
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'''Christoph will do this by Sunday'''
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading '''Simona DONE'''
 
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Christoph:
 
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* first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
 
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* too many "in order to"
 
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* mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
 
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* Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!
 
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* Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined#Light_switch_-_Chemotaxis : interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
 
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* "To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading '''Simona DONE'''
 
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C: give an idea about the complexity, e.g. high number of proteins and interactions;
 
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why did we use only Spiro and Mello?;
 
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models: text first as it explains the plots;
 
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please gibe a clearer description of the plots, for an external person it's almost not understandable
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
 
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* make clear we did this completely on our own, not implemented but created!; '''Great section!!!''' ''''THANKS!!!'''
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined C: see above
 
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design C: OK
 

Revision as of 21:20, 25 October 2010

Internal

This section will be removed before wiki-freeze!

DO NOT EDIT NOW!!!

General remarks

  • Protein names: normally written
  • gene names: italic
  • Directed movement NOT running, please correct!
  • chemotaxis pathway NOT Chemotaxis nor chemotactic
  • E. lemming with space
    • E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified E. coli
  • far-red light, not far red light, please correct!
  • internal links - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
  • in silico & in vivo, not in-silico & in-vivo

Teaser & Animations

  • Drafts of teaser & animation text

Responsibilities, Tasks & Suggestions

Introduction

  • https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
    • Responsibility: George
    • Proofreading: Elsa
    • Status: 50%
    • ToDo: improve text, add speech
    • Suggestions:
      • Elsa: change background to other color
      • Jörg: add automated microscope image
      • Vincent: make chapters, different effect for highlighting of parts

Biology & Wet Laboratory

  • https://2010.igem.org/Team:ETHZ_Basel/Biology
    • Responsibility: Elsa
    • Proofreading: Katharina
    • Status:
    • ToDo:
    • Suggestions:
      • Someone: first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms, second paragraph: quite unclear, if possible, add more details & explain more
      • Someone: add a few sentences (and link them) regarding ARL & Safety

Mathematical Modeling

  • https://2010.igem.org/Team:ETHZ_Basel/Modeling
    • Responsibility: Moritz
    • Proofreading: Christoph
    • Status:
    • ToDo:
    • Suggestions:
      • Christoph: improve language
      • Christoph: first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
      • Christoph: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
      • Christoph: Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!
      • Christoph: Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
  • https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
    • Responsibility: Moritz
    • Proofreading: Luzi
    • Status:
    • ToDo:
    • Suggestions:
      • Christoph: To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence
  • https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
    • Responsibility: George
    • Proofreading: Simona
    • Status:
    • ToDo:
    • Suggestions:
      • Elsa: link to chemotaxis
      • Moritz: state that models are based on published models and adapted by us.
      • Someone: add picture from chemotaxis pathway
      • Christoph: give an idea about the complexity, e.g. high number of proteins and interactions;
      • Christoph: why did we use only Spiro and Mello?;
      • Christoph: models: text first as it explains the plots;
      • Christoph: please gibe a clearer description of the plots, for an external person it's almost not understandable

Information Processing

Achievements

Team

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