Team:ESBS-Strasbourg/Project/Reference

From 2010.igem.org

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<div class="heading">Application</div>
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<div class="heading">References</div>
<div class="desc">
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.... :<br><br>
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<a href="http://">1.</a>
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<br>
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<a href="http://">2.</a>
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<br>
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<a href="http://">3.</a>
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<br>
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<a href="https://2010.igem.org/Team:ESBS-Strasbourg/Project/Strategy#system">4. Light controllable protease</a>
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<br><br>
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<a href="http://">other link if needed</a>
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<div class="heading">References</div>
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<br>
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<img src="https://static.igem.org/mediawiki/2010/c/cf/Team_ESBS-Strasbourg_construction.jpg">
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<ul>
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<font>
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<br>
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<li><p align="left">Ahlawat, S. and D. A. Morrison (2009). &quot;ClpXP degrades SsrA-tagged
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blabla</div>
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proteins in Streptococcus pneumoniae.&quot; <u>J Bacteriol</u> <b>
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<br>
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191</b>(8): 2894-8.</font></p></li>
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</td>
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<font>
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</tr>
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<li><p align="left">Davis, J. H., T. A. Baker, et al. (2009). &quot;Engineering synthetic
 +
adaptors and substrates for controlled ClpXP degradation.&quot; <u>J Biol Chem</u> <b>284</b>(33): 21848-55.</font></p></li>
 +
<font>
 +
<li><p align="left">Glynn, S. E., A. Martin, et al. (2009). &quot;Structures of
 +
asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+
 +
protein-unfolding machine.&quot; <u>Cell</u> <b>139</b>(4):
 +
744-56.</font></p></li>
 +
<font>
 +
<li><p align="left">Goldberg, A. L. (2003). &quot;Protein degradation and protection
 +
against misfolded or damaged proteins.&quot; <u>Nature</u> <b>426</b>(6968):
 +
895-9.</p></li>
 +
<li><p align="left">Griffith, K. L. and A. D. Grossman (2008). &quot;Inducible protein
 +
degradation in Bacillus subtilis using heterologous peptide tags and adaptor
 +
proteins to target substrates to the protease ClpXP.&quot; <u>Mol Microbiol</u> <b>70</b>(4): 1012-25.</p></li>
 +
<li><p align="left">Khanna, R., E. Huq, et al. (2004). &quot;A novel molecular
 +
recognition motif necessary for targeting photoactivated phytochrome signaling
 +
to specific basic helix-loop-helix transcription factors.&quot; <u>Plant Cell</u> <b>16</b>(11): 3033-44.</p></li>
 +
<li><p align="left">Kunkel, T., K. Tomizawa, et al. (1993). &quot;In vitro formation of a
 +
photoreversible adduct of phycocyanobilin and tobacco apophytochrome B.&quot; <u>Eur J
 +
Biochem</u> <b>215</b>(3): 587-94.</p></li>
 +
<li><p align="left">Lee, M. E., T. A. Baker, et al. (2010). &quot;Control of substrate
 +
gating and translocation into ClpP by channel residues and ClpX binding.&quot;
 +
<u>J Mol Biol</u> <b>399</b>(5): 707-18.</p></li>
 +
<li><p align="left">Levchenko, I., R. A. Grant, et al. (2005). &quot;Versatile modes of
 +
peptide recognition by the AAA+ adaptor protein SspB.&quot; <u>Nat Struct Mol Biol</u> <b>12</b>(6): 520-5.</p></li>
 +
<li><p align="left">Levskaya, A., A. A. Chevalier, et al. (2005). &quot;Synthetic
 +
biology: engineering Escherichia coli to see light.&quot; <u>Nature</u> <b>438</b>(7067): 441-2.</p></li>
 +
<li><p align="left">Levskaya, A., O. D. Weiner, et al. (2009). &quot;Spatiotemporal
 +
control of cell signalling using a light-switchable protein interaction.&quot;
 +
<u>Nature</u> <b>461</b>(7266): 997-1001.</p></li>
 +
<li><p align="left">Li, H., Y. Ma, et al. (2010). &quot;A protease-based strategy for the
 +
controlled release of therapeutic peptides.&quot; <u>Angew Chem Int Ed Engl</u> <b>49</b>(29): 4930-3.</p></li>
 +
<li><p align="left">Martin, A., T. A. Baker, et al. (2005). &quot;Rebuilt AAA + motors
 +
reveal operating principles for ATP-fuelled machines.&quot; <u>Nature</u> <b>437</b>(7062): 1115-20.</p></li>
 +
<li><p align="left">McGinness, K. E., T. A. Baker, et al. (2006). &quot;Engineering
 +
controllable protein degradation.&quot; <u>Mol Cell</u> <b>22</b>(5):
 +
701-7.</p></li>
 +
<li><p align="left">McGinness, K. E., D. N. Bolon, et al. (2007). &quot;Altered tethering
 +
of the SspB adaptor to the ClpXP protease causes changes in substrate delivery.&quot;
 +
<u>J Biol Chem</u> <b>282</b>(15): 11465-73.</p></li>
 +
<li><p align="left">Mukougawa, K., H. Kanamoto, et al. (2006). &quot;Metabolic
 +
engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or
 +
phycoerythrobilin chromophore in Escherichia coli.&quot; <u>FEBS Lett</u> <b>580</b>(5): 1333-8.</p></li>
 +
<li><p align="left">Pedersen, C. B., P. Bross, et al. (2003). &quot;Misfolding,
 +
degradation, and aggregation of variant proteins. The molecular pathogenesis of
 +
short chain acyl-CoA dehydrogenase (SCAD) deficiency.&quot; <u>J Biol Chem</u> <b>278</b>(48): 47449-58.</p></li>
 +
<li><p align="left">Tigges, M., T. T. Marquez-Lago, et al. (2009). &quot;A tunable
 +
synthetic mammalian oscillator.&quot; <u>Nature</u> <b>457</b>(7227):
 +
309-12.</p></li>
 +
<li><p align="left">Zhang, Y. and P. Zuber (2007). &quot;Requirement of the zinc-binding
 +
domain of ClpX for Spx proteolysis in Bacillus subtilis and effects of disulfide
 +
stress on ClpXP activity.&quot; <u>J Bacteriol</u> <b>189</b>(21):
 +
7669-80.</font></p></li></ul>
 +
 
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Revision as of 22:31, 25 October 2010

{|

ESBS - Strasbourg



References
References

  • Ahlawat, S. and D. A. Morrison (2009). "ClpXP degrades SsrA-tagged proteins in Streptococcus pneumoniae." J Bacteriol 191(8): 2894-8.

  • Davis, J. H., T. A. Baker, et al. (2009). "Engineering synthetic adaptors and substrates for controlled ClpXP degradation." J Biol Chem 284(33): 21848-55.

  • Glynn, S. E., A. Martin, et al. (2009). "Structures of asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+ protein-unfolding machine." Cell 139(4): 744-56.

  • Goldberg, A. L. (2003). "Protein degradation and protection against misfolded or damaged proteins." Nature 426(6968): 895-9.

  • Griffith, K. L. and A. D. Grossman (2008). "Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP." Mol Microbiol 70(4): 1012-25.

  • Khanna, R., E. Huq, et al. (2004). "A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors." Plant Cell 16(11): 3033-44.

  • Kunkel, T., K. Tomizawa, et al. (1993). "In vitro formation of a photoreversible adduct of phycocyanobilin and tobacco apophytochrome B." Eur J Biochem 215(3): 587-94.

  • Lee, M. E., T. A. Baker, et al. (2010). "Control of substrate gating and translocation into ClpP by channel residues and ClpX binding." J Mol Biol 399(5): 707-18.

  • Levchenko, I., R. A. Grant, et al. (2005). "Versatile modes of peptide recognition by the AAA+ adaptor protein SspB." Nat Struct Mol Biol 12(6): 520-5.

  • Levskaya, A., A. A. Chevalier, et al. (2005). "Synthetic biology: engineering Escherichia coli to see light." Nature 438(7067): 441-2.

  • Levskaya, A., O. D. Weiner, et al. (2009). "Spatiotemporal control of cell signalling using a light-switchable protein interaction." Nature 461(7266): 997-1001.

  • Li, H., Y. Ma, et al. (2010). "A protease-based strategy for the controlled release of therapeutic peptides." Angew Chem Int Ed Engl 49(29): 4930-3.

  • Martin, A., T. A. Baker, et al. (2005). "Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines." Nature 437(7062): 1115-20.

  • McGinness, K. E., T. A. Baker, et al. (2006). "Engineering controllable protein degradation." Mol Cell 22(5): 701-7.

  • McGinness, K. E., D. N. Bolon, et al. (2007). "Altered tethering of the SspB adaptor to the ClpXP protease causes changes in substrate delivery." J Biol Chem 282(15): 11465-73.

  • Mukougawa, K., H. Kanamoto, et al. (2006). "Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli." FEBS Lett 580(5): 1333-8.

  • Pedersen, C. B., P. Bross, et al. (2003). "Misfolding, degradation, and aggregation of variant proteins. The molecular pathogenesis of short chain acyl-CoA dehydrogenase (SCAD) deficiency." J Biol Chem 278(48): 47449-58.

  • Tigges, M., T. T. Marquez-Lago, et al. (2009). "A tunable synthetic mammalian oscillator." Nature 457(7227): 309-12.

  • Zhang, Y. and P. Zuber (2007). "Requirement of the zinc-binding domain of ClpX for Spx proteolysis in Bacillus subtilis and effects of disulfide stress on ClpXP activity." J Bacteriol 189(21): 7669-80.

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