Team:Cambridge

From 2010.igem.org

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Revision as of 16:04, 25 October 2010

Abstract

We placed genes from fireflies and bioluminescent bacteria into E.coli. Codon optimisation and single amino acid mutagenesis allowed us to generate bright light output in a range of different colours. Future applications include and quantitative biosensors and biological alternatives to conventional lighting.

Multimedia

If you want a break from hard-core science, check out our Gibson Assembly music video.

You can also see view videos of our bacterial bubble lamp and project overview.

Tools

Gibson
Assembly Ligation
Calculator

The Project

Project Firefly

We are the Cambridge Team for iGEM 2010. Over the course of the summer we have built a number of BioBricks to allow bioluminescence. We used genes originally found in fireflies (Photinus pyralis and Luciola cruciata) and those from the marine bacterium Vibrio fischeri.

We adopted a number of strategies to extend the use of firefly luciferase:

Codon optimisation for increased light output
Use of a luciferin regenerating enzyme.
Mutagenesis to create a number of different colours

Project Vibrio

We complemented these firefly systems, which require the addition of the substrate luciferin, with light producing systems from Vibrio fischeri. We believe we have created the first BioBrick to emit light in normal E. coli strains without the addition of any external substrate.

Tools

Over the summer we constructed a number of tools to assist the synthetic biologists of the future:

Gibthon allows the user to enter a series of BioBrick or GenBank IDs in a specific order and computes the appropriate primers for Gibson Assembly.
BioBrick → GenBank allows parts from the registry to be downloaded in .gb format, making them compatible with a wide range of biological software.
The 'E.glometer' is a cheap, easily built, piece of electronics for measuring bioluminescence. It allows scientists without access to expensive plate readers to measure bioluminescence.

The team - in order - Anja Hohmann, Emily Knott, Hannah Copley, Will Handley, Theo Sanderson, Ben Reeve, Paul Masset, Peter Emmrich, Bill Collins

@@ Line 17: / Line 17: @@
 {{:Team:Cambridge/Templates/Nolineheader2|header=Project Vibrio
 }}
-We complemented these firefly systems, which require the addition of the substrate luciferin, with light producing systems from '''Vibrio fischeri'''.  We believe we have created the '''first''' biobrick to emit light in normal E. coli strains without the addition of any luciferin substrate.
+We complemented these firefly systems, which require the addition of the substrate luciferin, with light producing systems from '''Vibrio fischeri'''.  We believe we have created the [https://2010.igem.org/Team:Cambridge/Bioluminescence/G28 '''first BioBric'''k] to emit light in normal E. coli strains without the addition of any external substrate.
 {{:Team:Cambridge/Templates/Nolineheader2|header=Tools}}
@@ Line 24: / Line 24: @@
 * '''[https://2010.igem.org/Team:Cambridge/Tools/Gibson Gibthon]''' allows the user to enter a series of BioBrick or GenBank IDs in a specific order and computes the appropriate primers for [https://2010.igem.org/Team:Cambridge/Gibson/Introduction '''Gibson Assembly'''].
 * [https://2010.igem.org/Team:Cambridge/Tools/GenBank BioBrick → GenBank] allows parts from the registry to be downloaded in .gb format, making them '''compatible''' with a wide range of biological software.
-* The [https://2010.igem.org/Team:Cambridge/Tools/Eglometer '''E.glometer'''] is a cheap, easily built, piece of electronics for measuring bioluminescence.  It allows scientists without access to expensive plate readers to measure bioluminescence.
+* The [https://2010.igem.org/Team:Cambridge/Tools/Eglometer ''''''E.glometer''''''] is a cheap, easily built, piece of electronics for measuring bioluminescence.  It allows scientists without access to expensive plate readers to measure bioluminescence.