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Team:LMU-Munich/ProSearch
From 2010.igem.org
(Difference between revisions)
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<OPTION VALUE="Hypoxia">Hypoxia</OPTION> | <OPTION VALUE="Hypoxia">Hypoxia</OPTION> | ||
</SELECT> | </SELECT> | ||
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| + | |||
| + | <!-- SearchBar --> | ||
| + | <div class="search"><span class="tr"><span class="tl"></span></span><span class="br"><span class="bl"></span></span><span class="tr2"></span><div class="search_top"><label for="search_term">Search:</label><select name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.SearchResourceList" sid="1" id="database"><option value="/sites/gquery" resource="gquery">All Databases</option><option value="/pubmed" resource="pubmed">PubMed</option><option selected="selected" value="protein" resource="protein">Protein</option><option value="/nuccore" resource="nuccore">Nucleotide</option><option value="/nucgss" resource="nucgss">GSS</option><option value="/nucest" resource="nucest">EST</option><option value="/structure" resource="structure">Structure</option><option value="/genome" resource="genome">Genome</option><option value="/biosample" resource="biosample">BioSample</option><option value="/biosystems" resource="biosystems">BioSystems</option><option value="/books" resource="books">Books</option><option value="/cancerchromosomes" resource="cancerchromosomes">CancerChromosomes</option><option value="/cdd" resource="cdd">Conserved Domains</option><option value="/gap" resource="gap">dbGaP</option><option value="/dbvar" resource="dbvar">dbVar</option><option value="/domains" resource="domains">3D Domains</option><option value="/epigenomics" resource="epigenomics">Epigenomics</option><option value="/gene" resource="gene">Gene</option><option value="/genomeprj" resource="genomeprj">Genome Project</option><option value="/gensat" resource="gensat">GENSAT</option><option value="/geoprofiles" resource="geoprofiles">GEO Profiles</option><option value="/gds" resource="gds">GEO DataSets</option><option value="/homologene" resource="homologene">HomoloGene</option><option value="/journals" resource="journals">Journals</option><option value="/mesh" resource="mesh">MeSH</option><option value="/ncbisearch" resource="ncbisearch">NCBI Web Site</option><option value="/nlmcatalog" resource="nlmcatalog">NLM Catalog</option><option value="/omia" resource="omia">OMIA</option><option value="/omim" resource="omim">OMIM</option><option value="/pepdome" resource="pepdome">Peptidome</option><option value="/pmc" resource="pmc">PMC</option><option value="/popset" resource="popset">PopSet</option><option value="/probe" resource="probe">Probe</option><option value="/proteinclusters" resource="proteinclusters">Protein Clusters</option><option value="/pcassay" resource="pcassay">PubChem BioAssay</option><option value="/pccompound" resource="pccompound">PubChem Compound</option><option value="/pcsubstance" resource="pcsubstance">PubChem Substance</option><option value="/snp" resource="snp">SNP</option><option value="/sra" resource="sra">SRA</option><option value="/taxonomy" resource="taxonomy">Taxonomy</option><option value="/toolkit" resource="toolkit">ToolKit</option><option value="/toolkitall" resource="toolkitall">ToolKitAll</option><option value="/unigene" resource="unigene">UniGene</option><option value="/unists" resource="unists">UniSTS</option></select></div><div class="search_bottom"><input name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Term" sid="1" type="text" id="search_term" value="" title="Search Protein" cmd="Go" class="jig-ncbiautocomplete" config="isEnabled:false,disableUrl:'EntrezSearchBarAutoComplCtrl'" autocomplete="off" suggest="true" /><button name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Search" sid="1" id="search" class="button_search" cmd="go">Search</button><button name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Clear" sid="1" id="Clear" class="button_clear">Clear</button></div><div class="search_extras"><ul class="inline_list"><li><a name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.LimitsLink" sid="1" onclick="return false;" href="/protein/limits" id="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.LimitsLink">Limits</a></li><li><a name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Advanced" sid="1" onclick="return false;" href="/protein/advanced" id="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Advanced">Advanced search</a></li><li><a name="Help" href="/bookshelf/br.fcgi?book=helpentrez&part=EntrezHelp#EntrezHelp.Entrez__the_Life_Sci" target="_blank" id="Help">Help</a></li></ul></div><input name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.CurrDb" sid="1" type="hidden" value="protein" /><script type="text/javascript"> | ||
| + | var d = document.getElementById('search_term'); | ||
| + | if (d) {d.focus();} | ||
| + | </script></div> | ||
| + | |||
<p>Specific Gene (leave empty for all):<br><input type="text" name="gene" size="50" maxlength="50"></p> | <p>Specific Gene (leave empty for all):<br><input type="text" name="gene" size="50" maxlength="50"></p> | ||
Revision as of 19:14, 14 October 2010
This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T.
ProSearch System
Retrieve Genes, their Promoters and Transcription Factors for a specific condition
