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Team:Stanford/Analog Sensor
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uses a transcription factor regulated by a kinase/phosphotase pair. In this system, the phosphorylated form of the transcription factor causes transcription of a gene coding for our output protein. The production of the transcription factor is under the control of a constitutive promoter, which maintains a basal concentration. The kinase that acts on the transcription factor is under the control of a promoter positively regulated by A. A phosphotase is similarly controlled by input B. By testing the concentration of output protein in relation to various concentrations of input chemicals, we plan to create an algorithm that will allow us to work backwards from a given concentration of output protein to deduce the ratio of the original concentrations of input chemicals. | uses a transcription factor regulated by a kinase/phosphotase pair. In this system, the phosphorylated form of the transcription factor causes transcription of a gene coding for our output protein. The production of the transcription factor is under the control of a constitutive promoter, which maintains a basal concentration. The kinase that acts on the transcription factor is under the control of a promoter positively regulated by A. A phosphotase is similarly controlled by input B. By testing the concentration of output protein in relation to various concentrations of input chemicals, we plan to create an algorithm that will allow us to work backwards from a given concentration of output protein to deduce the ratio of the original concentrations of input chemicals. | ||
| - | ===Diagrams=== | + | Read about our [[Team:Stanford/Digital Sensor|other sensor]] or return to our [[Team:Stanford/Research|project]] page. |
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| + | ===Device and Parts Level Diagrams=== | ||
[[Image:EnzymePairDevice.jpg | 700px | caption]] | [[Image:EnzymePairDevice.jpg | 700px | caption]] | ||
| + | <br>Input A '''(1)''' activates receiver 1 '''(3)''', which activates the reporter '''(5)''', causing synthesis of the output protein '''(6)'''. | ||
| - | + | Input B '''(2)''' activates receiver 2 '''(4)''', which inactivates the reporter '''(5)''', decreasing synthesis of the output protein '''(6)'''. | |
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| - | Input B '''(2)''' activates receiver 2 '''(4)''', which inactivates the reporter '''(5)''', | + | |
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| + | [[Image:Slide12.jpg| 700px | caption]] | ||
| + | <br>Part K353007 is under the control of R0040, so there is always some basal level of transcription factor present within the cell. | ||
| + | L-arabinose binds to I0500, causing transcription of K353005, which phosphorylates the transcription factor K353007, allowing it to bind and activate K353008 (reporter). | ||
| + | AHL binds to F2620, activating transcription of K353006, which removes the phosphate group from the the transcription factor (K353007), inactivating it and preventing it from binding K353008. | ||
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Latest revision as of 03:08, 28 October 2010
| Home | Project | Applications | Modeling | Parts | Team | Notebook |
The Kinase-Phosphatase Sensor
Overview
Our second sensor design responds to a range of ratios, varying the intensity of the output to indicate the ratio of input chemicals.
One of the input chemicals leads to the phosphorylation of a transcription factor, while the other leads to its de-phosphorylation. Only the phosphorylated version of the transcription factor can activate the promoter upstream of the output protein. Visit our modeling page to read about how the ratio of the two inputs can be computed as a linear function of the output.
uses a transcription factor regulated by a kinase/phosphotase pair. In this system, the phosphorylated form of the transcription factor causes transcription of a gene coding for our output protein. The production of the transcription factor is under the control of a constitutive promoter, which maintains a basal concentration. The kinase that acts on the transcription factor is under the control of a promoter positively regulated by A. A phosphotase is similarly controlled by input B. By testing the concentration of output protein in relation to various concentrations of input chemicals, we plan to create an algorithm that will allow us to work backwards from a given concentration of output protein to deduce the ratio of the original concentrations of input chemicals.
Read about our other sensor or return to our project page.
Device and Parts Level Diagrams
Input A (1) activates receiver 1 (3), which activates the reporter (5), causing synthesis of the output protein (6).
Input B (2) activates receiver 2 (4), which inactivates the reporter (5), decreasing synthesis of the output protein (6).
Part K353007 is under the control of R0040, so there is always some basal level of transcription factor present within the cell.
L-arabinose binds to I0500, causing transcription of K353005, which phosphorylates the transcription factor K353007, allowing it to bind and activate K353008 (reporter).
AHL binds to F2620, activating transcription of K353006, which removes the phosphate group from the the transcription factor (K353007), inactivating it and preventing it from binding K353008.
