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| - | {{ETHZ_Basel10}}
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| - | {{ETHZ_Basel10_Empty}}
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| - | = Internal =
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| - | This section will be removed before wiki-freeze!
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| - |
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| - | = Acknowledged problems/incomplete pages =
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| - |
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| - | = General remarks =
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| - | * '''Protein names''': normally written
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| - | * '''gene names''': italic
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| - | * '''Directed movement''' NOT running, please correct!
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| - | * '''chemotaxis''' pathway NOT Chemotaxis nor chemotactic
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| - | * '''E. lemming''' with space
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| - | * E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified ''E. coli''
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| - | * '''far-red light''', not far red light, please correct!
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| - | * '''internal links''' - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
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| - | * ''in silico'' & ''in vivo'', not in-silico & in-vivo
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| - |
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| - | = Suggestions =
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| - |
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| - | * We need to be consistent in the use of formal/informal language. what do you decide upon this?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Elsa'''
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| - | first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
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| - | <br>second paragraph: quite unclear, if possible, add more details & explain more
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| - | <br>add a few sentences (and link them) regarding ARL & Safety
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
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| - | 50 μm (?) high flow channel; remove question mark
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
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| - | in second part of the page, 'cells with highest score'; define the score
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| - | <br>clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
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| - | added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?
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| - |
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
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| - | spacing, subheadings & some bullet points); suggesting more images for the user experience part
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
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| - | Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria
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| - | check with biology to keep it updated (check list)
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team
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| - | Add link to Biozentrum Unibas.
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| - |
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| - | = General =
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| - | * Movies: '''George & Luzi''' Almost done, but needs speech! '''Elsa'''
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| - | * Matlab Toolboxes: '''Moritz & George'''
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| - |
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| - | = Proofreading =
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| - |
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| - | ===Introduction===
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| - | * https://2010.igem.org/Team:ETHZ_Basel '''EVERYONE''': Please read every text of the teaser and suggest improvements.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation '''EVERYONE''': Please read and suggest improvements.
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| - |
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| - | ===Biology & Wet Laboratory===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation '''Thanuja DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Archean_Light_Receptor '''Elsa'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety '''Elsa'''
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| - |
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| - | ===Mathematical Modeling===
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| - |
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| - | '''Christoph will do this by Sunday'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading '''Simona DONE'''
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| - | Christoph:
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| - | * first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
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| - | * too many "in order to"
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| - | * mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
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| - |
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| - | * Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!
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| - |
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| - | * Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined#Light_switch_-_Chemotaxis : interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | * "To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading '''Simona DONE'''
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| - | C: give an idea about the complexity, e.g. high number of proteins and interactions;
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| - | why did we use only Spiro and Mello?;
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| - | models: text first as it explains the plots;
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| - | please gibe a clearer description of the plots, for an external person it's almost not understandable
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
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| - | * make clear we did this completely on our own, not implemented but created!; '''Great section!!!''' ''''THANKS!!!'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined C: see above
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design C: OK
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| - |
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| - | ===Information Processing===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection '''Thanuja DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization '''Thanuja DONE'''
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| - |
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| - | ===Achievements===
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| - |
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| - | == Pick-a-task ==
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| - | * https://2010.igem.org/Team:ETHZ_Basel: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Simona DONE''' '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Archean_Light_Receptor: Image: change font to Trebuchet MS, save as PNG, put Sequence into container, link references '''Elsa'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety: finish content '''Elsa, need help!'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch: '''Simona 1/2 done''' Shorten text
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: '''Simona DONE''', '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined: '''Simona''' make coherent
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow:'''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection'''Thanuja: Done'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization'''Thanuja: Done'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller: '''Simona''' Check spaces between paragraphs
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game: Upload movie to ethzigem10 Youtube account
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements: Will we have experimental date? Make otherwise overview of achievements.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox: finish content
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox: Arrange examples different. (remove spaces), correct references.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Interworking: '''Simona''' Finish content and decide upon final title.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Simulation: Upload movie to ethzigem10 Youtube account and finish content
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria: '''Thanuja DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team: Moritz: 350*350px picture;
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"
