Team:Edinburgh/Bacterial/References

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References

Elowitz, M. B. and S. Leibler (2000). A synthetic oscillatory network of transcriptional regulators. Nature 403(6767): 335-338.

Danino, T., O. Mondragon-Palomino, et al (2009). A synchronized quorum of genetic clocks. Nature 463(7279): 326-330.

Garcia-Ojalvo, J., M. B. Elowitz, et al. (2004). Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. Proceedings of the National Academy of Sciences of the United States of America 101(30): 10955-10960.

Seliger, H. H., & McElroy, W. D. (1964). The Colors of Firefly Bioluminescence: Enzyme Configuration and Species Specificity. PNAS 52 (1) 75-81

Branchini, B. R., Southworth, T. L., Khattak, N. F., Michelini, E. & Roda, A. (2005). Red- and green-emitting firefly luciferase mutants for bioluminescent reporter applications. Analytical Biochemistry 345, 140-148.

Branchini, B. R., Ablamsky, D. M., Murtiashaw, M. H., Uzasci, L., Fraga, H. & Southworth, T. L. (2007). Thermostable red and green light-producing firefly luciferase mutants for bioluminescent reporter applications. Analytical Biochemistry 361, 253-262.

Moradi, A., Hosseinkhani, S., Naderi-Manesh, H., Sadeghizadeh, M. & Alipour, B. S. (2009). Effect of Charge Distribution in a Flexible Loop on the Bioluminescence Color of Firefly Luciferases. Biochemistry 48, 575-582.

O'Kane, D. J. & Lee, J. (1985). Chemical characterization of lumazine protein from Photobacterium leiognathi: comparison with lumazine protein from Photobacterium phosphoreum. Biochemistry 24, 1467-1475.

Suadee, C., Nijvipakul, S., et al. (2008). LuxG Is a Functioning Flavin Reductase for Bacterial Luminescence. J. Bacteriol. 190(5): 1531-1538

Fujii, H., Noda, K., Asami, Y., Kuroda, A., Sakata, M. & Tokida, A. (2007). Increase in bioluminescence intensity of firefly luciferase using genetic modification. Analytical Biochemistry 366, 131-136.

Shapirol, E., Lu, C., Baneyx, F. (2009). Design and characterization of novel trypsin-resistant firefly luciferases by site-directed mutagenesis. Protein Eng Des Sel 22(11): 655-663.

Levskaya, A., Chevalier, A. A., Tabor, J. J. & other authors (2005). Synthetic biology: Engineering Escherichia coli to see light. Nature 438, 441-442.

Gambetta, G. A. & Lagarias, J. C. (2001). Genetic engineering of phytochrome biosynthesis in bacteria. Proceedings of the National Academy of Sciences of the United States of America 98, 10566-10571.

Levskaya, A., O. D. Weiner, et al. (2009). Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature Vol 461

Strickland, D., Moffat, K. & Sosnick, T. R. (2008). Light-activated DNA binding in a designed allosteric protein. Proceedings of the National Academy of Sciences 105, 10709-10714.

Schüttrigkeit, T. A., Kompa, C. K., Salomon, M., Rüdiger, W. & Michel-Beyerle, M. E. (2003). Primary photophysics of the FMN binding LOV2 domain of the plant blue light receptor phototropin of Avena sativa. Chemical Physics 294, 501-508.

Wu, Y. I., D. Frey, et al. (2009). A genetically encoded photoactivatable Rac controls the motility of living cells. Nature Vol 461

Hirose, Y., Shimada, T., Narikawa, R., Katayama, M. & Ikeuchi, M. (2008). Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proceedings of the National Academy of Sciences 105, 9528-9533.

Makino, K., Shinagawa, H., Amemura, M., Kawamoto, T., Yamada, M., Nakata, A. (1989). Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins. Journal of Molecular Biology 210(3), 551-559

Kalogeraki, V. S. and Winans, S. C. (1996). Suicide plasmids containing promoterless reporter genes can simultaneously disrupt and create fusions to target genes of diverse bacteria. Gene 188(1), 69-75

Edinburgh 2009 team wiki, https://2009.igem.org/Team:Edinburgh.

Ljubljana 2007 team wiki, https://2007.igem.org/Ljubljana.

UT Austin 2004 team wiki (Registry coliroid page), http://partsregistry.org/Coliroid.

Harvard 2008 team wiki, https://2008.igem.org/Team:Harvard.

EPF Lausanne 2009 team wiki, https://2009.igem.org/Team:EPF-Lausanne.

Tokyo-Nokogen 2009 team wiki, https://2009.igem.org/Team:Tokyo-Nokogen.

Cambridge 2010 team wiki, https://2010.igem.org/Team:Cambridge.

Mexico UNAM-Genomics 2010 team wiki, https://2010.igem.org/Team:UNAM-Genomics_Mexico.