Team:UNIPV-Pavia/Material Methods/Measurements/Tecan/test2settembre

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Latest revision as of 14:10, 27 October 2010

SEPTEMBER, 2ND

PLATE

EXPERIMENT DESCRIPTION

Motivation

This experiment was performed in M9 to check bacterial growth and RFP rate synthesis in order to evaluate the R.P.U. (see Protocol) of the promoters from Anderson's collection in high copy and low copy number plasmids.

Methods

Accordign to Protocol 2 the experiment was performed in M9 on the following parts:

<partinfo>BBa_J23100</partinfo>
<partinfo>BBa_J23101</partinfo>
<partinfo>BBa_J23105</partinfo>
<partinfo>BBa_J23106</partinfo>
<partinfo>BBa_J23110</partinfo>
<partinfo>BBa_J23114</partinfo>
<partinfo>BBa_J23116</partinfo>
<partinfo>BBa_J23118</partinfo>
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23100</partinfo> (wiki name: BBa_J23100_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23101</partinfo> (wiki name: BBa_J23101_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23105</partinfo> (wiki name: BBa_J23105_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23106</partinfo> (wiki name: BBa_J23106_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23110</partinfo> (wiki name: BBa_J23110_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23114</partinfo> (wiki name: BBa_J23114_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23116</partinfo> (wiki name: BBa_J23116_4C5)
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23118</partinfo> (wiki name: BBa_J23118_4C5)
<partinfo>BBa_B0031</partinfo> (negative control)

RESULTS

In high copy number plasmids it is possible to identify 3 groups: strong promoters (<partinfo>Ba_J23100</partinfo> and <partinfo>BBa_J23101</partinfo>), medium strength promoters (in order <partinfo>BBa_J23110</partinfo> and <partinfo>BBa_J23118</partinfo>) and a group of weak promoters.

Promoter	R.P.U. (average)	std
<partinfo>BBa_J23100</partinfo>	0.946	0.182
<partinfo>BBa_J23101</partinfo>	1	-
<partinfo>BBa_J23105</partinfo>	0.196	0.038
<partinfo>BBa_J23106</partinfo>	0.326	0.015
<partinfo>BBa_J23110</partinfo>	0.678	0.096
<partinfo>BBa_J23114</partinfo>	0.091	0.022
<partinfo>BBa_J23116</partinfo>	0.101	0.004
<partinfo>BBa_J23118</partinfo>	0.655	0.035

In low copy number plasmids there are the same 3 groups but <partinfo>BBa_J23118</partinfo> resulted stronger than <partinfo>BBa_J23110</partinfo>.

Promoter	R.P.U. (average)	std
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23100</partinfo>	0.838	0.101
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23101</partinfo>	1	-
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23105</partinfo>	0.149	0.045
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23106</partinfo>	0.286	0.033
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23110</partinfo>	0.466	0.101
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23114</partinfo>	0.053	0.048
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23116</partinfo>	0.110	0.007
<partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23118</partinfo>	0.714	0.154

Tecan Test

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-<html><p align="center"><font size="5"><b>17° TEST</b></font><br><br><font size="4">[SEPTEMBER, 2ND]</font></p></html><hr><br>
+<html><p align="center"><font size="5"><b>SEPTEMBER, 2ND</b></font></p></html><hr><br>
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 * <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23116</partinfo> (wiki name: BBa_J23116_4C5)
 * <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23118</partinfo> (wiki name: BBa_J23118_4C5)
-* <partinfo>BBa_B0031</partinfo>
+* <partinfo>BBa_B0031</partinfo> (negative control)
-==RESULTS (?)==
+==RESULTS==
+[[Image:UNIPV_Pavia_HCpromotersM9.png| 620px | center ]]
+In high copy number plasmids it is possible to identify 3 groups: strong promoters (<partinfo>Ba_J23100</partinfo> and <partinfo>BBa_J23101</partinfo>), medium strength promoters (in order <partinfo>BBa_J23110</partinfo> and <partinfo>BBa_J23118</partinfo>) and a group of weak promoters.
+{| border='1' align='center'
+|| Promoter || R.P.U. (average) || std
+|-
+|| <partinfo>BBa_J23100</partinfo> || 0.946 || 0.182
+|-
+|| <partinfo>BBa_J23101</partinfo> || 1 || -
+|-
+|| <partinfo>BBa_J23105</partinfo> || 0.196 || 0.038
+|-
+|| <partinfo>BBa_J23106</partinfo> || 0.326 || 0.015
+|-
+|| <partinfo>BBa_J23110</partinfo> || 0.678 || 0.096
+|-
+|| <partinfo>BBa_J23114</partinfo> || 0.091 || 0.022
+|-
+|| <partinfo>BBa_J23116</partinfo> || 0.101 || 0.004
+|-
+|| <partinfo>BBa_J23118</partinfo> || 0.655 || 0.035
+|}
+[[Image:UNIPV_Pavia_LCpromotersM9.png| 620px | center ]]
+In low copy number plasmids there are the same 3 groups but <partinfo>BBa_J23118</partinfo> resulted stronger than <partinfo>BBa_J23110</partinfo>.
+{| border='1' align='center'
+|| Promoter || R.P.U. (average) || std
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23100</partinfo> || 0.838 || 0.101
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23101</partinfo> || 1 || -
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23105</partinfo> || 0.149 || 0.045
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23106</partinfo> || 0.286 || 0.033
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23110</partinfo> || 0.466 || 0.101
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23114</partinfo> || 0.053 || 0.048
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23116</partinfo> || 0.110 || 0.007
+|-
+|| <partinfo>pSB4C5</partinfo> - <partinfo>BBa_J23118</partinfo> || 0.714 || 0.154
+|}
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@@ Line 50: / Line 98: @@
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 <td align="left" width="50%">[[Team:UNIPV-Pavia/Material Methods/Measurements/Tecan/test1settembre|Previous Test]]</td>
-<td align="right" width="50%">[[Team:UNIPV-Pavia/Material Methods/Measurements/Tecan/test14settembre| Next Test]]</td>
+<td align="right" width="50%">[[Team:UNIPV-Pavia/Material Methods/Measurements/Tecan/test8settembre| Next Test]]</td>
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+{{UNIPV-Pavia/Menu_measurments}}
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-[[Team:UNIPV-Pavia/Material_Methods/Measurements|MEASUREMENTS]]
-</td></tr>
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-[[Team:UNIPV-Pavia/Material_Methods/Measurements/Tecan|Tecan Test]]
-</td></tr>
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