Team:Gothenburg-Sweden

From 2010.igem.org

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+
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<head>
 +
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
 +
<title>Chalmers University of Technology</title>
 +
<style type="text/css">
<style type="text/css">
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@charset "UTF-8";
 
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/* wiki modificiations start */
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body {
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a:visited  { color: #ba7007; }
 
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a:hover    { color: black; }
 
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padding-top:10px;
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width: 970px;height: 145px;
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-
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-
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-
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h2 {background:transparent; text-decoration:none;  }
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#search-controls { display:none;}
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#menubar.left-menu {width: 400px;  display:block; float:left; margin-top:-50px; border: none;}
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#menubar.left-menu a:selected{color:#e6f6fb;}
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.content {
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padding-top: 20px;
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padding-bottom: 20px;
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#menubar.right-menu a{color:#5698b0;}
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#menubar.right-menu a:hover{color:#e6f6fb;}
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-
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 +
/* wiki modifications end/
-
/* LEFT NAVIGATION */
 
-
.leftnavigation {
 
-
width: 192px;
 
-
margin: 70px 0px 0px 0px;
 
-
padding-left: 8px;
 
-
float: left;
 
-
list-style-type: none;
 
-
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-
.leftnavigation a{
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text-decoration: none;
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background-position: 0px 0px;
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border-bottom: 1px solid #999;
+
}
}
-
.leftnavigation a:visited{
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-
color: #364957;
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a:hover{
 +
padding:0;margin:0;
 +
    text-decoration: underline;
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    color: #000066;
 +
 
 +
}
}
-
.leftnavigation a:hover{
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-
color: #ffffff;
+
a:visited{color:#06639E;}
-
background-image: url(https://static.igem.org/mediawiki/2010/8/89/Nav_down.jpg);
+
 
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*
 +
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 +
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    margin: 0;
}
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-
/* CONTENT AREA */
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}
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.contentleft {
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float: left;
+
  margin-left:15px;
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+
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}
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#search {height: 30px;}
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margin-top: 0px;
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}
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width: 210px;
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    padding-left:45px;
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}
}
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-
float: right;
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    color: #fff;
 +
    font-size: 16px;
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    text-align:center;
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    width:100%;
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    height: 30px;
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    padding-top: 7px;
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    margin-top:7px;
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    background: url(https://static.igem.org/mediawiki/2010/a/aa/CatTitle.png);
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    background-repeat:no-repeat;
 +
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}
}
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.imageleft {
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-
margin-right: 10px;
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.left_grad{
-
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}
}
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.categories{
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-
/* FOOTER AREA */
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background-color: #cfcfcf;
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background-image: url(https://static.igem.org/mediawiki/2010/e/ec/Footer_bkgd.jpg);
+
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-
background-repeat: no-repeat;
+
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 +
#news p{
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 +
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 +
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}
}
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 +
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 +
    font-size:12px;
 +
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 +
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 +
 
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}
 +
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}
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cursor: pointer;
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+
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 +
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 +
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 +
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 +
 
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 +
 
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{ display: block;
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 +
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 +
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 +
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 +
                       
 +
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 +
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 +
           
 +
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 +
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 +
 
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 +
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 +
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 +
font-weight:600 !important;
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 +
#sddm li a:hover
 +
{ background: url(https://static.igem.org/mediawiki/2010/0/0c/MActive2.png) top center repeat-y;
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 +
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 +
font-weight:600;
 +
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 +
#sddm div
 +
{ position: absolute;
 +
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 +
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 +
                     
 +
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 +
background: #fff ;
 +
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 +
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 +
 +
 +
#sddm div a
 +
{ position: relative;
 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
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 +
font-family: sans-serif, Tahoma, Verdana, Geneva, Arial, Helvetica !important;
 +
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 +
text-decoration: none;
 +
background: transparent;
 +
color: #2e6d95;
 +
font-weight:normal !important;
 +
font-size: 11px !important ;
 +
border:none;
 +
 +
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 +
 +
#sddm div a:hover
 +
{ background: #61b5da  url(https://static.igem.org/mediawiki/2010/9/9d/MArrow.png) no-repeat;
 +
 +
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 +
text-decoration:none;
 +
font:  11px arial;
 +
font-weight:500;
 +
}
 +
 +
/* menu ends */
 +
 +
#text{
 +
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 +
width:100%;
 +
margin: 5px 10px 10px 0px;
 +
        background: #fff ;
}
}
 +
#text p
 +
{
 +
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 +
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 +
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 +
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 +
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.logo{
 +
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 +
padding: 10px 20px 10px 20px;
 +
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#text p{color: #07374E;}
 +
 +
.read{
 +
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 +
    padding-bottom:5px;
 +
  /* padding-right: 5px;*/
 +
}
-
.AccordionPanelOpen .AccordionPanelTab {
+
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-
color: #d88a37;
+
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-
background-image: url(https://static.igem.org/mediawiki/2010/7/7d/Accordion_255_tab_down.gif);
+
    font-weight:normal;
 +
    color: #00456e;
 +
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 +
    height: 36px;
 +
   
 +
    padding-top: 10px;
 +
    padding-right:-200px;
 +
    margin-left: 20px;
 +
    text-align:center;
 +
    background: url(https://static.igem.org/mediawiki/2010/6/64/Title_center.png) left top;
 +
    background-repeat:no-repeat;
 +
 
}
}
 +
#team {
 +
padding: 20px 10px 20px 30px;
-
.AccordionPanelTabHover {
 
-
background-image: url(https://static.igem.org/mediawiki/2010/1/1f/Accordion_255_tab_over.gif);
 
}
}
 +
/* center ends */
-
.AccordionFocused .AccordionPanelTab {
+
/* right starts */
-
background-color: #000000;
+
 
 +
#right{
 +
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 +
    padding-left: 20px;
 +
    /*padding-right: 135px;*/
 +
    float:left;
}
}
 +
#right .read a{
 +
   
 +
    color: #06639e;
 +
    font-weight:normal;
 +
    font-style: italic;
 +
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 +
    text-decoration:none;
 +
    border-bottom: 1px #06639e;
 +
    padding-right:10px;
 +
}
-
.AccordionFocused .AccordionPanelOpen .AccordionPanelTab {
+
#right .read a:hover{border-bottom: 1px dotted #06639e;}
-
background-color: #000000;
+
 
 +
 
 +
#lab{
 +
 +
padding-top:0px;
 +
background: url(https://static.igem.org/mediawiki/2010/1/10/CatCon.png) top left repeat-y;
 +
min-height:100px;
 +
/*margin-left:30px;*/
 +
border: 1px dotted #0485B0;
 +
}
 +
.numleft{
 +
background: url(https://static.igem.org/mediawiki/2010/2/22/Numbg1.png);
 +
background-repeat: no-repeat;
 +
background-position: left top;
 +
float:right;
 +
width: 37px;
 +
min-height: 37px;
 +
font-family: Arial,Helvetica,sans-serif;
 +
 +
font-weight: bold;
 +
color: #ffffff;
 +
text-align: center;
 +
margin: 25px 8px 0px 8px;
 +
}
 +
 +
 +
.numleft p{
 +
padding-top: 2px;
 +
            padding-left: 1px;
 +
font-size: 16px;
 +
 +
}
 +
 +
 +
.newsright{
 +
    text-align:left;
 +
margin: 10px 50px 0 10px;
 +
}
 +
 +
.newsright p{
 +
font-size:11px;
 +
            color:#07374E;
 +
            margin-top:7px;
 +
 +
}
 +
 
 +
.Title3 {
 +
    font-family: Comic Sans;
 +
    font-weight:600;
 +
    color: #fff;
 +
    font-size: 16px;
 +
    text-align:center;
 +
    width:100%;
 +
    height: 30px;
 +
    padding-top: 7px;
 +
    margin-top:7px;
 +
margin-left:0px;
 +
    background: url(https://static.igem.org/mediawiki/2010/c/cf/CatTitle1.png) ;
 +
    background-repeat:no-repeat;
 +
    background-position:top left;
}
}
-
/* Custom AUC classes */
+
/* right ends */
-
#accordion_255 {
+
 
-
background-image: url(https://static.igem.org/mediawiki/2010/9/9a/Accordion_255_tile.gif);
+
/* footer starts */
-
background-repeat: repeat-y;
+
 
-
background-position: 0px 0px;
+
#myfooter
 +
{
 +
    height: 60px;
 +
    font-size: 10px;
 +
    color: #00456e;
 +
    padding-right:180px;  
 +
   
 +
    clear:both;
}
}
-
.tabTop {
+
#myfooter p{
-
background-position: 0px 0px;
+
    color: #fff;
-
padding-top: 15px;
+
    font-size: 10px;
 +
    font-weight: normal;
 +
    text-decoration: none;
 +
padding-top:0px;
 +
    padding-left:0px; 
 +
bottom:0px;
}
}
-
.middleTab {
+
 
-
background-position: 0px -151px;
+
#myfooter a{
 +
  color: #fff;
 +
    font-size: 11px;
 +
    font-weight: normal;
 +
    text-decoration: none;
 +
  padding-left: 0px;
 +
  margin-top:0px;
 +
  bottom:0;
 +
 
}
}
-
.accordion_255_tab {
+
#myfooter a:hover{
-
margin: 0px;
+
  text-decoration: underline;
-
font-weight: bold;
+
}
}
-
.acontent {
+
/* footer ends */
-
height:200px;
+
 
-
width:220px;
+
 
-
overflow: auto;
+
 
-
padding: 5px 10px 10px 20px;
+
</style>
 +
 
 +
 
 +
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                                          <a href="https://2010.igem.org/Team:Gothenburg-Sweden/About_us#intro">Introduction</a>
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                                          <a href="https://2010.igem.org/Team:Gothenburg-Sweden/About_us#cth">CHALMERS</a></li>
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<h1>iGEM team - Sweden, Gothenburg</h1>
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<p>We are a team of 8 students from Chalmers University of Technology who will represent Gothenburg, SWEDEN in this year’s IGEM competition. IGEM stands for International Genetically Engineered Machines and is a competition based upon interdisciplinary collaboration of students on a Synthetic Biology project. The competition is held in MIT, Boston and is open to all universities from various countries world-wide. There are 180 teams participating this year with about 2000 students in total. We have started with a promising idea that combines the cutting edge technologies available in the field of Synthetic Biology. Our research basically includes the specification and designing of a biological system followed by the application of Molecular Biology techniques to build and test it experimentally. The premise of the competition for the students will be to learn engineering approaches and tools to organize, model, and assemble complex systems and to immerse themselves in applied molecular biology. In the project, we are investigating a biological phenomenon that is a part of insulin uptake mechanism, widely studied in Diabetic research. Our endeavor in the study is to visualize a part of the mechanism by making use of the Nobel Prize winning idea of the Green Fluorescent Proteins (GFPs). Hopefully, the project will provide us with auspicious outcomes to further improve the study of the disease.</p>
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                                <strong>CHALMERS UNIVERSITY OF TECHNOLOGY, GOTHENBURG</strong></p>
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                              <p>We are a team of 8 students from Chalmers University of Technology     who will represent Gothenburg, SWEDEN in this year’s iGEM competition.     We have started with a promising idea that combines cutting edge     technologies available in the field of Synthetic Biology. Our research     basically aims to constructing an optical reporter mechanism for    cellular stress by tagging the stress activated SNF1 complex in yeast    with fluorescent markers.<br>
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                              The project is performed with two main experimental  pathways: Both  experimental setups will utilize FRET to visualize the   conformational  change that is the result SNF1 activation. The first  approach consists  of fusing fluorescent two proteins, EYFP and ECFP,  with the SNF1  complex. The principal is that when the protein is   activated it  undergoes a conformational change and this should be  indicated by a  change in the FRET-signal. The second approach utilizes  a SAMS-peptide  with fluorescent proteins fused to each end. The  SAMS-peptide will be  phosphorylated by the active SNF1-complex and  undergo a conformational  change that again will be indicated by the   FRET-signal.<br>  
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                                The long term ambition of this project it is to use the  results in  the pharmaceutical industry when performing high-throughput  screening  for new substances or finding the correct drug  concentrations to use.   The yeast cells with the modified SNF1-complex  can be moved through a  micro-fluidic system, gradually exposing them  to an array of substances  or a concentration gradient thereby easily  finding at which  concentration or by what substance the cells are  stressed. <br>  
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  <br>  
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                              As of present we have purified the plasmid backbones that  will be  used together with fusion protein insert to transfect the  yeast cells.   The fusion protein primers has arrived and we will start  working with  the fusion PCR as of this week. We have completed the 3D  models of the  fusion proteins and the results look very promising, we  will soon be  able to present docking predictions with the complex.<br>  
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                                          <p>11</p>
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                                        </div>
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                                          <div class="newsright"><a href="#">August 11, 2010</a>
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                                          <p> The PCR reaction from yesterday was checked on a gel. α should be ... </p>
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                                          <div class="read"><a href="#">read more</a></div>
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                                    <p>Göteborgs-Posten, a major daily newspaper in Sweden with the second largest national circulation, published an article involving the interview with our team...
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  <div id="myfooter"> <p>   <a href="#">Home</a> | <a href="#">CTH</a> | <a href="#">Sponsors</a> | <a href="#">About Us</a> | <a href="#">Contact Us</a></p> <p>Chalmers University of Technology, Gothenburg, SWEDEN</p>
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Latest revision as of 11:56, 3 October 2010

Chalmers University of Technology

Team
Introduction CHALMERS Supervisors Students
FUSS
What's all about? Background Protein Fusion Methods Preliminary Results

CHALMERS UNIVERSITY OF TECHNOLOGY, GOTHENBURG

We are a team of 8 students from Chalmers University of Technology who will represent Gothenburg, SWEDEN in this year’s iGEM competition. We have started with a promising idea that combines cutting edge technologies available in the field of Synthetic Biology. Our research basically aims to constructing an optical reporter mechanism for cellular stress by tagging the stress activated SNF1 complex in yeast with fluorescent markers.

The project is performed with two main experimental pathways: Both experimental setups will utilize FRET to visualize the conformational change that is the result SNF1 activation. The first approach consists of fusing fluorescent two proteins, EYFP and ECFP, with the SNF1 complex. The principal is that when the protein is activated it undergoes a conformational change and this should be indicated by a change in the FRET-signal. The second approach utilizes a SAMS-peptide with fluorescent proteins fused to each end. The SAMS-peptide will be phosphorylated by the active SNF1-complex and undergo a conformational change that again will be indicated by the FRET-signal.

The long term ambition of this project it is to use the results in the pharmaceutical industry when performing high-throughput screening for new substances or finding the correct drug concentrations to use. The yeast cells with the modified SNF1-complex can be moved through a micro-fluidic system, gradually exposing them to an array of substances or a concentration gradient thereby easily finding at which concentration or by what substance the cells are stressed.

As of present we have purified the plasmid backbones that will be used together with fusion protein insert to transfect the yeast cells. The fusion protein primers has arrived and we will start working with the fusion PCR as of this week. We have completed the 3D models of the fusion proteins and the results look very promising, we will soon be able to present docking predictions with the complex.

Home | CTH | Sponsors | About Us | Contact Us

Chalmers University of Technology, Gothenburg, SWEDEN

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