Team:Nevada/Transformations

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== NT Cell Transformations ==
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'''NT Cell Transformations'''
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<div id="vertmenu">
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<h1>Subpages</h1>
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<ul>
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<li><a href="https://2010.igem.org/Team:Nevada/Results" tabindex="2">Results</a></li>
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<li><a href="https://2010.igem.org/Team:Nevada/BY-2 (NT1)Transformation Protocol" tabindex="1">NT Cell Transformation Protocol</a></li>
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<p>Insert Text <html><a href="https://static.igem.org/mediawiki/2010/a/a6/IMG_6032.JPG"><img src="https://static.igem.org/mediawiki/2010/a/a6/IMG_6032.JPG" class="shadow" style="float:left;width:500px;margin:10px"></a>
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<li><a href="https://2010.igem.org/Team:Nevada/Agrobacterium Transformations" tabindex="3">Agrobacterium Transformations</a></li>
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</html>Text Continues</p>
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<li><a href="https://2010.igem.org/Team:Nevada/Transgenic Plants" tabindex="3">Transgenic Plants: into the Wild</a></li>
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</ul>
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</div>
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----
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'''Protocol'''
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'''CARE OF A NT CULTURE'''
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(adapted from a letter by Dr. Michael Sullivan)
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To readapt a culture on plates, simply transfer some of the cells back into liquid
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media.  We usually pipette the cell suspension up and down to break up any clumps.  It
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may be best to start out with a smaller culture volume when you first go back to liquid;
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BY-2 seems to be a bit happier if it isn't seeded to thinly.  Allow the culture to grow
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until it is the consistency of thin applesauce.  At this point, you should be able to go to
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a 50 ml culture and start subculturing as described below.  In our experience, wild-type
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BY-2 readapts quickly to liquid to give a smooth culture; transformed lines tend to be more
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variable, with some producing smooth cultures, some producing clumpy ones, and some going
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back and forth between these two states.  We've found that clumpy cultures do not interfere
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with our half-live measurements, although manipulating them can be a bit more difficult.
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We grow our liquid cultures in 50 ml of media in 250 ml  baffle flasks at 28 degrees C
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with gentle shaking (150 rpm). Using a baffle flask does not seem to be a requirement,  many
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people grow these cells in regular flasks with no problem.  We subculture them once a week
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by transferring 5% of the culture to fresh media.  We generally maintain two flasks
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(in two separate shakers) of two separate subcultures (one subcultured Monday, one on Friday)
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in case one of the cultures crashes.  Also, you can maintain the culture on a plate.
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Note that, for liquid cultures of transformed lines, we usually use a smaller culture volume,
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e.g. 10 ml, for convenience.
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'''NT KC MEDIA - LIQUID OR PLATES
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NT LIQUID:'''
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(amounts are for 1L of media):
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750 ml  H2O
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4.3 g  MS salts (add slowly to liquid)
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30 g    Sucrose
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50 ml  20X MES pH 5.7
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10 ml  B1 -inositol
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3 ml    Miller's  I
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10 ml  2,4-D, 10-4 M
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pH to 5.7 with 0.1 N KOH
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Bring volume to 1000ml
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Autoclave
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'''SOLID MEDIA:'''
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For plates only:  Add to flasks  7 g/ L Phytagar before autoclaving
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Add kanamycin (100 mg/ml)
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Add carbenicillin (250 mg/ml)
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'''MEDIA COMPONENTS:'''
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Miller's I: 60 g KH2 PO4  per liter
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20 X MES: 10 g MES per liter, pH to 5.7 with 1N KOH
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B1 - Inositol: 0.1 g Thiamine, 10.0 g myo-inositol, H2O to final volume of 1 liter
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'''TRANSFORMATION PROTOCOL:
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NT Cell Transformation with Agrobactrium'''
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'''Day 1:'''
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1. Grow up 1 ml of the Agrobacterium overnight in LB + all selective drugs. This culture may be started from frozen glycerol cultures if necessary.
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'''Day 2:'''
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2.    NT cells are used 3 days after splitting the NT cell culture. 4 ml of NT cells are required for each transformation with an additional 4 ml for the control culture which receives no bacteria.
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3. 1 ul Acetosyringone (20 mM in ethanol) is added per ml of NT cells. Typically treat the whole 50 ml culture at this point and discard any that is left over when I'm finished.
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4. Using a 10 ml pipette, the NT cells are pipetted in and out about 20 times. This helps to induce small lesions in the cells and increases the efficiency of the transformation.
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5. 75 ul of bacteria (dense growth) or 100 ul (moderate growth) are added to a petri dish containing 4 ml of NT cells (from step 4) and mixed thoroughly.  REMEMBER TO INCLUDE A CONTROL HAVING NO BACTERIA.
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6. Wrap plates with parafilm and incubate for 3 days at 28 degrees C.
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'''Day 5:'''
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7. To each plate add 10 ml of NT liquid medium containing 500 (u)g/ml carbenicillin (NTC).
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8. Collect cells off of the plates into 50 ml conical tubes and fill with NTC.
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9. Centrifuge at 1K for 4 minutes at room temperature in a swinging bucket rotor.
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10. Aspirate off liquid using pipet capped with a sterile blue 1 ml top. Change tip for each sample.
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11. Resuspend in 50 ml NTC and repeat spin.
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12. Repeat step 10 and 11 - 1 or 2 times.  Strains that are fairly sensitive to carb require fewer washes.
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13. Resuspend cells in approximately 5 ml NTC and plate 2.0 ml on 2 NTKC (kanamycin 100 ug/ml carbenicillin 500 ul/ml) plates.  When there is no longer lots of fluid on the plates (leave the plates open in the hood a few minutes of necessary), wrap them in parafilm.
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14. Incubate at 28 degrees C.  Transformants should be large enough to transfer to fresh NTKC plates in 3-4 weeks.
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'''Supplies for each transformation (Remember the controls):'''
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Day 1 Supplies:
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LB + appropriate drugs
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Agrobacterium containing plasmid for transformation
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Day 2 Supplies:
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1 ml Agrobacterium overnight culture
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4 ml BY-2 cells - 3 days post subculture
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4 ul acetosyringone (20 mM) found in the (-20) refrigerator freezer
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pipets and pipetman
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1 petri plate
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Day 5 Supplies:
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200 ml NTC liquid
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50 ml conical tube
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swinging bucket centrifuge at room temp aspiration setup with 5 ml pipet capped with 1 ml blue tip
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2 NTKC plates
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pipetmen and tips
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<html><a href="https://static.igem.org/mediawiki/2010/4/4f/IMG_6028.JPG"><img src="https://static.igem.org/mediawiki/2010/4/4f/IMG_6028.JPG" class="shadow" style="float:left;width:430px;margin:10px"></a>
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<p>This year the Nevada iGEM team has decided to utilize Tobacco (''Nicotiana tabacum'') NT1 cells due to its vigorous ability to grow rapidly as well as its simple and convenient model system characteristics. The original idea was to test the validity of utilizing ''Nicotiana tabacum'' (NT cells) as a model for the expression of higher plant genes for future iGEM competitions. Though the utilization of ''Arabidopsis'' was possible, we aimed to make a quick proof-of-concept test model that other iGEMers could utilize before moving synthetic constructs into plants of interest. This model system was specifically used to make the evaluation of our plant expression genes quick, simple and efficient. Typical whole-plant systems can take anywhere from a year or more to obtain results however the NT1 model system allowed us to obtain transformants on solid media in less than 5 weeks. The NT1 cell model system is also known to facilitate protein production and avoids typical complications of alternative ''in planta'' production – features highly advantageous to any type of research. Though this model system is new and unexplored in the iGEM areana, we found it to be extremely proficient and promising in terms of results.</p>
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<html><a href="https://static.igem.org/mediawiki/2010/3/3d/IMG_6035.JPG"><img src="https://static.igem.org/mediawiki/2010/3/3d/IMG_6035.JPG" class="shadow" style="float:right;width:430px;margin:10px"></a></html>
 
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<p>'''Left:''' NT Cell Culture after about 5 days. '''Right:''' NT Cell Transformation with RD29A (Cold, Drought, Salt Induciblbe Promoter.</p>
 
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Latest revision as of 03:13, 26 October 2010

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NT Cell Transformations


This year the Nevada iGEM team has decided to utilize Tobacco (Nicotiana tabacum) NT1 cells due to its vigorous ability to grow rapidly as well as its simple and convenient model system characteristics. The original idea was to test the validity of utilizing Nicotiana tabacum (NT cells) as a model for the expression of higher plant genes for future iGEM competitions. Though the utilization of Arabidopsis was possible, we aimed to make a quick proof-of-concept test model that other iGEMers could utilize before moving synthetic constructs into plants of interest. This model system was specifically used to make the evaluation of our plant expression genes quick, simple and efficient. Typical whole-plant systems can take anywhere from a year or more to obtain results however the NT1 model system allowed us to obtain transformants on solid media in less than 5 weeks. The NT1 cell model system is also known to facilitate protein production and avoids typical complications of alternative in planta production – features highly advantageous to any type of research. Though this model system is new and unexplored in the iGEM areana, we found it to be extremely proficient and promising in terms of results.


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