Team:LMU-Munich/ProSearch

From 2010.igem.org

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[[Image:prosearchZelle.jpg|300px|Logo|right]]
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==ProSearch System==
==ProSearch System==
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<html>
<html>
<body>
<body>
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<form action="/cgi-bin/getTF.cgi" method="get">
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<form action="http://ka0.org/igem/getTF.cgi" method="get">  
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<p>Condition<br> <p>Specific Gene (leave empty for all):<br><input type="text" name="gene" size="50" maxlength="50"></p>
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<p>Condition<br>  
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<SELECT NAME="condition">
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<SELECT NAME="condition">  
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<OPTION VALUE="RCAS-beta-cateinS37A">RCAS-beta-cateinS37A</OPTION>
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<OPTION VALUE="beta-catenin">bCatenin treatment</OPTION>  
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<OPTION VALUE="Conduritol B Epoxide">Conduritol B Epoxide</OPTION>  
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<OPTION VALUE="conduritolB">conduritol B treatment</OPTION>  
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<OPTION VALUE="Gammaherpesvirus">Gammaherpesvirus</OPTION>  
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<OPTION VALUE="gHerpes">gHerpes infection</OPTION>  
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<OPTION VALUE="HIV Integration">HIV Integration</OPTION>
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<OPTION VALUE="hiv">HIV infection</OPTION>  
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<OPTION VALUE="HLTV-1 p30">HLTV-1 p30</OPTION>  
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<OPTION VALUE="hypoxia">hypoxia</OPTION>  
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<OPTION VALUE="Hypoxia">Hypoxia</OPTION>
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<OPTION VALUE="htlv">HTLV infection</OPTION>  
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</SELECT>
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</SELECT>  
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<p>Specific Gene (leave empty for all):<br><input type="text" name="gene" size="50" maxlength="50"></p>  
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<!-- SearchBar -->
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<p><input type="submit" value="Send Query"></p>  
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    <div class="search"><span class="tr"><span class="tl"></span></span><span class="br"><span class="bl"></span></span><span class="tr2"></span><div class="search_top"><label for="search_term">Search:</label><select name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.SearchResourceList" sid="1" id="database"><option value="/sites/gquery" resource="gquery">All Databases</option><option value="/pubmed" resource="pubmed">PubMed</option><option selected="selected" value="protein" resource="protein">Protein</option><option value="/nuccore" resource="nuccore">Nucleotide</option><option value="/nucgss" resource="nucgss">GSS</option><option value="/nucest" resource="nucest">EST</option><option value="/structure" resource="structure">Structure</option><option value="/genome" resource="genome">Genome</option><option value="/biosample" resource="biosample">BioSample</option><option value="/biosystems" resource="biosystems">BioSystems</option><option value="/books" resource="books">Books</option><option value="/cancerchromosomes" resource="cancerchromosomes">CancerChromosomes</option><option value="/cdd" resource="cdd">Conserved Domains</option><option value="/gap" resource="gap">dbGaP</option><option value="/dbvar" resource="dbvar">dbVar</option><option value="/domains" resource="domains">3D Domains</option><option value="/epigenomics" resource="epigenomics">Epigenomics</option><option value="/gene" resource="gene">Gene</option><option value="/genomeprj" resource="genomeprj">Genome Project</option><option value="/gensat" resource="gensat">GENSAT</option><option value="/geoprofiles" resource="geoprofiles">GEO Profiles</option><option value="/gds" resource="gds">GEO DataSets</option><option value="/homologene" resource="homologene">HomoloGene</option><option value="/journals" resource="journals">Journals</option><option value="/mesh" resource="mesh">MeSH</option><option value="/ncbisearch" resource="ncbisearch">NCBI Web Site</option><option value="/nlmcatalog" resource="nlmcatalog">NLM Catalog</option><option value="/omia" resource="omia">OMIA</option><option value="/omim" resource="omim">OMIM</option><option value="/pepdome" resource="pepdome">Peptidome</option><option value="/pmc" resource="pmc">PMC</option><option value="/popset" resource="popset">PopSet</option><option value="/probe" resource="probe">Probe</option><option value="/proteinclusters" resource="proteinclusters">Protein Clusters</option><option value="/pcassay" resource="pcassay">PubChem BioAssay</option><option value="/pccompound" resource="pccompound">PubChem Compound</option><option value="/pcsubstance" resource="pcsubstance">PubChem Substance</option><option value="/snp" resource="snp">SNP</option><option value="/sra" resource="sra">SRA</option><option value="/taxonomy" resource="taxonomy">Taxonomy</option><option value="/toolkit" resource="toolkit">ToolKit</option><option value="/toolkitall" resource="toolkitall">ToolKitAll</option><option value="/unigene" resource="unigene">UniGene</option><option value="/unists" resource="unists">UniSTS</option></select></div><div class="search_bottom"><input name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Term" sid="1" type="text" id="search_term" value="" title="Search Protein" cmd="Go" class="jig-ncbiautocomplete" config="isEnabled:false,disableUrl:'EntrezSearchBarAutoComplCtrl'" autocomplete="off" suggest="true" /><button name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Search" sid="1" id="search" class="button_search" cmd="go">Search</button><button name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Clear" sid="1" id="Clear" class="button_clear">Clear</button></div><div class="search_extras"><ul class="inline_list"><li><a name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.LimitsLink" sid="1" onclick="return false;" href="/protein/limits" id="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.LimitsLink">Limits</a></li><li><a name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Advanced" sid="1" onclick="return false;" href="/protein/advanced" id="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.Advanced">Advanced search</a></li><li><a name="Help" href="/bookshelf/br.fcgi?book=helpentrez&amp;part=EntrezHelp#EntrezHelp.Entrez__the_Life_Sci" target="_blank" id="Help">Help</a></li></ul></div><input name="EntrezSystem2.PEntrez.Protein.Entrez_SearchBar.CurrDb" sid="1" type="hidden" value="protein" /><script type="text/javascript">
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</form>  
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var d = document.getElementById('search_term');
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if (d) {d.focus();}
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</script></div>
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<p>Specific Gene (leave empty for all):<br><input type="text" name="gene" size="50" maxlength="50"></p>
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<p><input type="submit" value="Send Query"></p>
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</form>
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</body>
</body>
</html>
</html>
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Latest revision as of 14:43, 25 October 2010


Logo



ProSearch System

This system is to search for new enhancer-promoter combinations that efficiently trigger gene expression in response to different stimuli. This part of the project is carried out through a bioinformatic modeling process. The end-product is a databank of related genes, their promoters and transcription factors at the input of a wished environmental condition. This system is useful for the construction of new inducible systems trying to utilize apoptosis or other gene expression in the human cell-line 293T.

Retrieve Genes, their Promoters and Transcription Factors for a specific condition

Condition

Specific Gene (leave empty for all):
 

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