Team:HokkaidoU Japan/Protocols

From 2010.igem.org

(Difference between revisions)
Line 1: Line 1:
{{Template:HokkaidoU_Japan}}
{{Template:HokkaidoU_Japan}}
 +
=Protocols=
-
=Protocols=
 
<ul class="acc" id="acc">
<ul class="acc" id="acc">
<li>
<li>
-
==Contents==
+
==Preparation of Competent cells (''E. coli'' DH5a)==
<div class="acc-section">
<div class="acc-section">
<div class="acc-content">
<div class="acc-content">
-
* Preparation of Competent cells (''E. coli'' DH5a)
 
-
* Bacterial Transformations
 
-
* Mini-prep (Alkaline SDS Method)
 
-
* PCR
 
-
* Restriction Enzyme Digestions
 
-
* DNA ligation
 
-
* Agarose gel electrophoresis
 
-
* Electroporation
 
-
</div></div>
 
-
</li>
 
-
</ul>
 
-
 
-
==Preparation of Competent cells (''E. coli'' DH5a)==
 
===Reagents===
===Reagents===
'''TB (Transformation Buffer)(at 4C, filtration)'''
'''TB (Transformation Buffer)(at 4C, filtration)'''
Line 67: Line 54:
# freeze the suspension in liquid nitrogen
# freeze the suspension in liquid nitrogen
# store at -80C
# store at -80C
-
 
+
</div></div>
-
 
+
</li>
 +
<li>
==Bacterial Transformations==
==Bacterial Transformations==
 +
<div class="acc-section">
 +
<div class="acc-content">
 +
</div></dvi>
 +
</li>
 +
<li>
==Mini-prep (Alkaline SDS Method)==
==Mini-prep (Alkaline SDS Method)==
 +
<div class="acc-section"><div class="acc-content">a</div></dvi></li><li>
==PCR==
==PCR==
 +
<div class="acc-section"><div class="acc-content">b</div></dvi></li><li>
==Restriction Enzyme Digestions==
==Restriction Enzyme Digestions==
 +
<div class="acc-section"><div class="acc-content">c</div></dvi></li><li>
==DNA ligation==
==DNA ligation==
 +
<div class="acc-section"><div class="acc-content">d</div></dvi></li><li>
==Agarose gel electrophoresis==
==Agarose gel electrophoresis==
 +
<div class="acc-section"><div class="acc-content">e</div></dvi></li><li>
==Electroporation==
==Electroporation==
 +
<div class="acc-section"><div class="acc-content">f</div></dvi></li></ul>
<html>
<html>

Revision as of 16:32, 21 September 2010

Protocols

  • Preparation of Competent cells (E. coli DH5a)

    Reagents

    TB (Transformation Buffer)(at 4C, filtration)

    Final concentration
    1 M CaCl2 (at RT, autoclaved) 0.75 mL 15 mM
    4 M KCl (at RT, autoclaved) 3.125 mL 250 mM
    1 M MnCl2 (at 4C, autoclaved) 2.75 mL 55 mM
    1 M PIPES (pH 6.7 by NaOH, at 4C, filtration) 0.5 mL 10 mM
    Total 50 mL

    filtration (0.2 um), store at 4C

    Method

    1. Single colony isolation on LB plate
    2. incubate the plate for 15-19 hrs at 37C
    3. lift a colony into 2 mL of LB
    4. culture cells at 37C for 12-16 hrs at 180-200 rpm
    5. transfer 30 uL, 100 uL, 300 uL of the culture into 100 mL SOB medium, respectively
    6. culture cells at 20C (for 24 hrs over) at 180-200 rpm (to ΔOD550nm = 0.5~0.6)
    7. leave the 300 mL flask for 10 min on ice
    8. transfer the culture into two 50 mL Falcon tube
    9. centrifuge 7500 rpm at 4C for 20 min (TOMY TA-22 rotor), and discard sup
    10. suspend the pellet in ice-cold 15 mL of TB (Transformation Buffer)(7.5 mL/tube)
    11. centrifuge 7500 rpm at 4C for 2 min (TOMY TA-22 rotor), and discard sup
    12. suspend the pellet in ice-cold 3.2 mL of TB
    13. add 0.24 mL of DMSO (stirring, bit by bit)
    14. leave the 50 mL Falcon tube for 10 min on ice
    15. dispense 50 uL into 0.5 mL tube
    16. freeze the suspension in liquid nitrogen
    17. store at -80C
  • Bacterial Transformations

    </dvi>

    </li>

  • Mini-prep (Alkaline SDS Method)

    a
    </dvi></li>
  • PCR

    b
    </dvi></li>
  • Restriction Enzyme Digestions

    c
    </dvi></li>
  • DNA ligation

    d
    </dvi></li>
  • Agarose gel electrophoresis

    e
    </dvi></li>
  • Electroporation

    f
    </dvi></li></ul>
Retrieved from "http://2010.igem.org/Team:HokkaidoU_Japan/Protocols"