Team:UT-Tokyo/Sudoku data
From 2010.igem.org
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- | '''Enzyme cut | + | '''Enzyme cut''' |
- | 2,3,5,7 plasmid(6/25 miniprep) | + | 2, 3, 5, 7 plasmid(6/25 miniprep) |
- | 2:53.9 ng/uL → about 15 uL(shortage) | + | 2 : 53.9 ng/uL → about 15 uL(shortage) / H / SP(2 uL) |
- | 3:124.2 ng/uL → 8 uL | + | 3 : 124.2 ng/uL → 8 uL / M / XP(2 uL) |
- | 5:81.3 ng/uL → 12.3 uL | + | 5 : 81.3 ng/uL → 12.3 uL / H / SP(2 uL) |
- | 7:85.4 ng/uL → 11.7 uL | + | 7 : 85.4 ng/uL → 11.7 uL / H / SP(2 uL) |
+ | |||
+ | |||
+ | '''Gel extract''' | ||
+ | |||
+ | 2, 3, 5, 7 plasmid(7/1 enzyme cut) | ||
Label: 100701 数X(2,3,5,9) ゲル抽出 | Label: 100701 数X(2,3,5,9) ゲル抽出 | ||
+ | |||
+ | |||
+ | |||
+ | ==== 7/2 ==== | ||
+ | |||
+ | '''Miniprep''' | ||
+ | |||
+ | 2-3, 11 plasmid(7/1 inoculation) | ||
+ | |||
+ | 2-3 → 105 ng/uL | ||
+ | |||
+ | 11(1st) → 191.3 ng/uL | ||
+ | |||
+ | 11(2nd) → 49.5 ng/uL | ||
+ | |||
+ | |||
+ | '''Enzyme cut''' | ||
+ | |||
+ | 2-3, 11 plasmid(7/2 miniprep) | ||
+ | |||
+ | 2-3 : 9.5 uL / H / ES(1.5 uL) | ||
+ | |||
+ | 11(1st) : 5.2 uL / H / ES(1.5 uL) → Judged failure by cut check → miniprep again | ||
+ | |||
+ | 11(2nd) : 20.2 uL / H / ES(1.5 uL) | ||
+ | |||
Revision as of 14:47, 23 August 2010
Sudoku
Data
Pre-experiment
Make construct
7/1
Transformation
2-3 plasmid(6/30 ligation)
<6/30 transformation → fail>
Inoculation
11 plasmid(6/30 thaw, transformation)
Enzyme cut
2, 3, 5, 7 plasmid(6/25 miniprep)
2 : 53.9 ng/uL → about 15 uL(shortage) / H / SP(2 uL)
3 : 124.2 ng/uL → 8 uL / M / XP(2 uL)
5 : 81.3 ng/uL → 12.3 uL / H / SP(2 uL)
7 : 85.4 ng/uL → 11.7 uL / H / SP(2 uL)
Gel extract
2, 3, 5, 7 plasmid(7/1 enzyme cut)
Label: 100701 数X(2,3,5,9) ゲル抽出
7/2
Miniprep
2-3, 11 plasmid(7/1 inoculation)
2-3 → 105 ng/uL
11(1st) → 191.3 ng/uL
11(2nd) → 49.5 ng/uL
Enzyme cut
2-3, 11 plasmid(7/2 miniprep)
2-3 : 9.5 uL / H / ES(1.5 uL)
11(1st) : 5.2 uL / H / ES(1.5 uL) → Judged failure by cut check → miniprep again
11(2nd) : 20.2 uL / H / ES(1.5 uL)
Check test
Check test
Number | Name | Link to BioBrick | Plate coordinate | Vector | Code length |
1 | T7 promoter |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_I712074 BBa_I712074] | plate1-6N | pSB1AK8 | 46bp |
2 | rbs |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_B0030 BBa_B0030] | plate1-1H | pSB1A2 | 15bp |
3 | cre recombinase |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_J61047 BBa_J61047] | plate1-5D | pSB1A2 | 1037bp |
4 | double terminator |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_B0014 BBa_B0014] | plate2-24C | pSB1AK3 | 95bp |
5 | lox66 recombinase site |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_I718017 BBa_I718017] | plate1-17J | pSB1A2 | 34bp |
6 | Kan resistance (rev) |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_J31002 BBa_J31002] | plate1-2K | pSB1A2 | 816bp |
7 | rbs (rev) |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_B0014 BBa_B0014] | plate1-1J | pSB1A2 | 15bp |
8 | lox71 recombinase site |
order-made | --- | --- | 34bp |
9 | single terminator |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_B1006 BBa_B1006] | plate1-4H | pSB1AK3 | 39bp |
10 | constant express promoter |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_J23119 BBa_J23119] | plate1-18A | pSB1A2 | 35bp |
11 | Tet resistance (rev) |
[http://partsregistry.org/wiki/index.php?title=Part:BBa_J31006 BBa_J31006] | plate1-1N | pSB1A2 | 1191bp |
Main construct
Research of SP6 RNApol cDNA and F plasmid
Research of SP6 RNApol cDNA and F plasmid
Convert lox71(rev) to lox66(rev)
Convert lox71(rev) to lox66(rev)
Make Hin(rev)
Make Hin(rev)
Revise MS2 gene
Revise MS2 gene
Make location(rev)-rbs(rev)-location(rev)
Make location(rev)-rbs(rev)-location(rev)