Team:TU Delft/2 August 2010 content

From 2010.igem.org

(Difference between revisions)
(→Alkane degradation)
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Results of the digestion on [[Team:TU_Delft/protocols/agarose_gel|1% agarose gel]]   
Results of the digestion on [[Team:TU_Delft/protocols/agarose_gel|1% agarose gel]]   
[[Image:TUDelft_20100802_digestion.png|400px|thumb|left|1% Agarose of digestion check ]]
[[Image:TUDelft_20100802_digestion.png|400px|thumb|left|1% Agarose of digestion check ]]
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gel runned at 100V for 1 hour
+
The gel was runned at 100V for 1 hour, loaded 5 μL of marker and 5 μL sample + 1 μL loadingbuffer
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loaded 5 μL of marker and 5 μL sample + 1 μL loadingbuffer
+
 
 +
Lane description:
 +
{|style="color:black; background-color:white;" cellpadding="5" cellspacing="0" border="1"
 +
|'''#'''
 +
|'''Description'''
 +
|'''Expected Length (bp)'''
 +
|'''Status'''
 +
|''Remarks'''
 +
|-
 +
|1
 +
|Smartladder
 +
|
 +
|
 +
|
 +
|-
 +
|2
 +
|‘E – J61100-AlkB2 – S’ (007T)
 +
|
 +
|✗
 +
|
 +
|-
 +
|3
 +
|Undigested 007T
 +
|
 +
|✗
 +
|
 +
|-
 +
|4
 +
|‘E – J61100-rubA3 – X’ (008A)
 +
|
 +
|✓
 +
|
 +
|-
 +
|5
 +
|Undigested 008A
 +
|
 +
|✓
 +
|
 +
|-
 +
|6
 +
|‘E – J61100-rubR – S’ (010A)
 +
|
 +
|✓
 +
|
 +
|-
 +
|7
 +
|Undigested 010A
 +
|
 +
|✓
 +
|
 +
|-
 +
|8
 +
|‘E – B0015 – pSB1AK3 – X’
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|
 +
|✓
 +
|
 +
|-
 +
|9
 +
|pSB1AK3-B0015
 +
|
 +
|✓
 +
|
 +
|-
 +
|10
 +
|‘E – J61100-ladA – S’ (017A)
 +
|
 +
|✓
 +
|
 +
|-
 +
|11
 +
|Undigested 017A
 +
|
 +
|✓
 +
|
 +
|-
 +
|12
 +
|‘X – J61101-ADH – P’ (018A)
 +
|
 +
|✓
 +
|
 +
|-
 +
|13
 +
|Undigested 018A
 +
|
 +
|✓
 +
|
 +
|-
 +
|14
 +
|‘E – J61107-ALDH – S’ (019A)
 +
|
 +
|✓
 +
|
 +
|-
 +
|15
 +
|Undigested (019A)
 +
|
 +
|✓
 +
|
 +
|-
 +
|16
 +
|‘E – pSB1K3 – P’
 +
|
 +
|✓
 +
|
 +
|-
 +
|17
 +
|Smartladder
 +
|
 +
|
 +
|
 +
|}

Revision as of 12:31, 3 August 2010

Alkane Sensing, Solvent Tolerance and Salt Tolerance

by Pieter

The plates containing yesterday's ligations contained colonies, to check whether they really contain the desired BioBrick a colony PCR was done, and the used colonies were grown in liquid LB medium over night. The results from the PCR were analysed on a 1% agarose gel.

Alkane degradation

For the next step in BioBrick formation a digestion was done:

# Sample Enzyme 1 Enzyme 2 Enzyme 3 Buffer BSA Needed fragment
1 1 μg 007T EcoRI SpeI BamH1 2 (Biolabs) ✓ ‘E – J61100-AlkB2 – S’
2 1 μg 008A EcoRI XbaI 2 (Biolabs) ✓ ‘E – J61100-rubA3 – X’
3 1 μg 010A EcoRI SpeI AseI 2 (Biolabs) ✓ ‘E – J61100-rubR – S’
4 2 μg B0015 EcoRI XbaI 2 (Biolabs) ✓ ‘E – B0015 – pSB1AK3 – X’
5 1 μg 017A EcoRI SpeI AseI 2 (Biolabs) ✓ ‘E – J61100-ladA – S’
6 1 μg 018A XbaI PstI AseI 2 (Biolabs) ✓ ‘X – J61101-ADH – P’
7 1 μg 019A EcoRI SpeI AseI 2 (Biolabs) ✓ ‘E – J61107-ALDH – S’
8 1 μg pSB1K3 EcoRI PstI 2 (Biolabs) ✓ ‘E – pSB1K3 – P’

Results of the digestion on 1% agarose gel

1% Agarose of digestion check

The gel was runned at 100V for 1 hour, loaded 5 μL of marker and 5 μL sample + 1 μL loadingbuffer

Lane description:

# Description Expected Length (bp) Status Remarks'
1 Smartladder
2 ‘E – J61100-AlkB2 – S’ (007T) ✗
3 Undigested 007T ✗
4 ‘E – J61100-rubA3 – X’ (008A) ✓
5 Undigested 008A ✓
6 ‘E – J61100-rubR – S’ (010A) ✓
7 Undigested 010A ✓
8 ‘E – B0015 – pSB1AK3 – X’ ✓
9 pSB1AK3-B0015 ✓
10 ‘E – J61100-ladA – S’ (017A) ✓
11 Undigested 017A ✓
12 ‘X – J61101-ADH – P’ (018A) ✓
13 Undigested 018A ✓
14 ‘E – J61107-ALDH – S’ (019A) ✓
15 Undigested (019A) ✓
16 ‘E – pSB1K3 – P’ ✓
17 Smartladder
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