Team:Newcastle/23 July 2010

From 2010.igem.org

(Difference between revisions)
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====Aims of the experiment====
====Aims of the experiment====
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The aim of today's experiment is to extract genomic DNA from ''Bacillus subtilis'' strain 3610,genes from which will be needed for the swarming biobrick.  
The aim of today's experiment is to extract genomic DNA from ''Bacillus subtilis'' strain 3610,genes from which will be needed for the swarming biobrick.  
====Materials Required====
====Materials Required====
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* Cells grown from yesterday
* Cells grown from yesterday
* Centrifuge
* Centrifuge
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=====Cell lysis=====
=====Cell lysis=====
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# Pellet cells by centrifugation at 3600rpm for 10 minutes
# Pellet cells by centrifugation at 3600rpm for 10 minutes
# Pour off supernatant
# Pour off supernatant
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=====RNase treatment=====
=====RNase treatment=====
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# Add 3 microlitres of RNAse A solution to the cell lysate
# Add 3 microlitres of RNAse A solution to the cell lysate
# Mix by inverting 25 times and incubate at 37°C for 60 minutes
# Mix by inverting 25 times and incubate at 37°C for 60 minutes
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=====DNA precipitation=====
=====DNA precipitation=====
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# Pour the supernatant containing the DNA into a clean eppendorf tube. (The samples may be kept at -20°C overnight at this stage.)
# Pour the supernatant containing the DNA into a clean eppendorf tube. (The samples may be kept at -20°C overnight at this stage.)
# Add 0.5ml isopropanol to each tube.
# Add 0.5ml isopropanol to each tube.
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=====DNA hydration=====
=====DNA hydration=====
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# Add 100 µl DNA hydration solution to each tube.
# Add 100 µl DNA hydration solution to each tube.
# Rehydrate DNA by incubating the sample for 1 hour at 65°C and overnight at room temperature. Tap the tube periodically to aid in dispersing the DNA.
# Rehydrate DNA by incubating the sample for 1 hour at 65°C and overnight at room temperature. Tap the tube periodically to aid in dispersing the DNA.
# For storage, centrifuge briefly and store at -20°C.
# For storage, centrifuge briefly and store at -20°C.

Revision as of 13:54, 23 July 2010

Contents

Aims of the experiment

The aim of today's experiment is to extract genomic DNA from Bacillus subtilis strain 3610,genes from which will be needed for the swarming biobrick.

Materials Required

  • Cells grown from yesterday
  • Centrifuge
  • pipette
  • lysozyme
  • Cell lysis solution
  • RNase solution
  • protein orecipitation solution
  • ice
  • isopropanol
  • ethanol

Procedure

Cell lysis
  1. Pellet cells by centrifugation at 3600rpm for 10 minutes
  2. Pour off supernatant
  3. Add 0.5ml of cell suspension solution, gently pipet up and down to resuspend and transfer to 1.5ml eppendorf tube
  4. Add 25microlitres of lysozyme and invert 25 times
  5. Incubate for 30minutes at 37°C inverting occasionally
  6. Centrifuge at 13000rpm for 10minutes to pellet the cells then remove the supernatant
  7. Add 0.5ml of cell lysis solution to the cell pellet and gently pipet up and down to lyse the cells
  8. Heat sample for 30 mins mix every 5-10 mins
RNase treatment
  1. Add 3 microlitres of RNAse A solution to the cell lysate
  2. Mix by inverting 25 times and incubate at 37°C for 60 minutes
Protein precipitation
  1. Cool samples on ice.
  2. Add 0.5 ml protein precipitation solution to each tube.
  3. Vortex vigorously at high speed for 20 seconds to miux the protein precipitation solution uniformly with the cell lysate. Place samples on ice for 5 minutes.
  4. Centrifuge at 1300 rpm for 30 seconds or until the precipitated proteins form a tight pellet.
DNA precipitation
  1. Pour the supernatant containing the DNA into a clean eppendorf tube. (The samples may be kept at -20°C overnight at this stage.)
  2. Add 0.5ml isopropanol to each tube.
  3. Mix by inverting gently for 50 times.
  4. Centrifuge at 1300 rpm for 1 minute. The DNA should be visible as a small white pellet.
  5. Pour off the supernatant and drain the tube on clean absorbent paper. Add 0.5 ml 70% ethanol and invert tube several times to wash the DNA.
  6. Centrifuge at 1300 rpm for 1 minute. Carefully pour off the ethanol.
  7. Drain the tubes on clean absorbent paper. Allow to air dry for 10-15 minutes.
DNA hydration
  1. Add 100 µl DNA hydration solution to each tube.
  2. Rehydrate DNA by incubating the sample for 1 hour at 65°C and overnight at room temperature. Tap the tube periodically to aid in dispersing the DNA.
  3. For storage, centrifuge briefly and store at -20°C.
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