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-{{ETHZ_Basel10}}
-{{ETHZ_Basel10_Empty}}
-= Internal =
-This section will be removed before wiki-freeze!
-= DO NOT EDIT NOW!!! =
-== General remarks ==
-* '''Protein names''': normally written
-* '''gene names''': italic
-* '''Directed movement''' NOT running, please correct!
-* '''chemotaxis''' pathway NOT Chemotaxis nor chemotactic
-*  '''E. lemming''' with space
-** E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified ''E. coli''
-* '''far-red light''', not far red light, please correct!
-* '''internal links''' - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
-* ''in silico'' & ''in vivo'', not in-silico & in-vivo
-== [[Team:ETHZ_Basel/Internal/TeaserAnimations|Teaser & Animations]] ==
-* Drafts of teaser & animation text
-== Responsibilities, Tasks & Suggestions ==
-=== Introduction ===
-* https://2010.igem.org/Team:ETHZ_Basel
-** Responsibility: George
-** Proofreading: Elsa
-** Status: 80%
-** ToDo: change pictures, improve text
-** Suggestions: [[Team:ETHZ_Basel/Internal/TeaserAnimations|see the special section.]]
-* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
-** Responsibility: Simona
-** Proofreading: Thanuja
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
-** Responsibility: George
-** Proofreading: Elsa
-** Status: 50%
-** ToDo: improve text, add speech
-** Suggestions:
-*** Elsa: change background to other color
-*** Jörg: add automated microscope image
-*** Vincent: make chapters, different effect for highlighting of parts
-* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Media
-** Responsibility: Katharina
-** Proofreading: Elsa
-** Status:
-** ToDo:
-** Suggestions:
-=== Biology & Wet Laboratory ===
-* https://2010.igem.org/Team:ETHZ_Basel/Biology
-** Responsibility: Elsa
-** Proofreading: Katharina
-** Status:
-** ToDo:
-** Suggestions:
-*** Someone: first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms, second paragraph: quite unclear, if possible, add more details & explain more
-*** Someone: add a few sentences (and link them) regarding ARL & Safety
-* https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism
-** Responsibility: Elsa
-** Proofreading: Sonja
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning
-** Responsibility: Sonja
-** Proofreading: Elsa
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
-** Responsibility: Sonja
-** Proofreading: Katharina
-** Status:
-** ToDo:
-** Suggestions:
-*** Someone: added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?
-* https://2010.igem.org/Team:ETHZ_Basel/Biology/Archeal_Light_Receptor
-** Responsibility: Elsa
-** Proofreading: Sonja
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety
-** Responsibility: Elsa
-** Proofreading: Christoph
-** Status:
-** ToDo:
-** Suggestions:
-=== Mathematical Modeling ===
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling
-** Responsibility: Moritz
-** Proofreading: Christoph
-** Status:
-** ToDo:
-** Suggestions:
-*** Christoph: improve language
-*** Christoph: first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
-*** Christoph: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
-*** Christoph: Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!
-*** Christoph: Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
-** Responsibility: Moritz
-** Proofreading: Luzi
-** Status:
-** ToDo:
-** Suggestions:
-*** Christoph: To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
-** Responsibility: George
-** Proofreading: Simona
-** Status:
-** ToDo:
-** Suggestions:
-*** Elsa: link to chemotaxis
-*** Moritz: state that models are based on published models and adapted by us.
-*** Someone: add picture from chemotaxis pathway
-*** Christoph: give an idea about the complexity, e.g. high number of proteins and interactions;
-*** Christoph: why did we use only Spiro and Mello?;
-*** Christoph: models: text first as it explains the plots;
-*** Christoph: please gibe a clearer description of the plots, for an external person it's almost not understandable
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
-** Responsibility: Simona
-** Proofreading: Luzi
-** Status:
-** ToDo:
-** Suggestions:
-*** Christoph: make clear we did this completely on our own, not implemented but created!
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
-** Responsibility: Moritz
-** Proofreading: Simona
-** Status:
-** ToDo:
-** Suggestions:
-*** Christoph: interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
-** Responsibility: George
-** Proofreading: Simona
-** Status:
-** ToDo:
-** Suggestions:
-=== Information Processing ===
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
-** Responsibility: George
-** Proofreading: Thanuja
-** Status:
-** ToDo:
-** Suggestions:
-*** Someone: 50 &mu;m (?) high flow channel; remove question mark
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope
-** Responsibility: Moritz (finished)
-** Proofreading: Katharina
-** Status: 90%
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
-** Responsibility: Moritz (finished)
-** Proofreading: Christoph
-** Status: 90%
-** ToDo:
-** Suggestions:
-*** Someone: in second part of the page, 'cells with highest score'; define the score
-*** Someone: clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
-** Responsibility: Moritz (finished)
-** Proofreading: Simona
-** Status: 90%
-** ToDo:
-** Suggestions:
-*** Someone: Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
-** Responsibility: Moritz (finished)
-** Proofreading: George
-** Status: 90%
-** ToDo:
-** Suggestions:
-*** Jörg: add explanation (legend) to the movie.
-*** Someone: spacing, subheadings & some bullet points); suggesting more images for the user experience part
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller
-** Responsibility: Simona
-** Proofreading: Thanuja
-** Status: 75%
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game
-** Responsibility: Moritz
-** Proofreading: Simona
-** Status:
-** ToDo:
-** Suggestions:
-=== Achievements ===
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements
-** Responsibility: Thanuja
-** Proofreading: George
-** Status:
-** ToDo:
-** Suggestions: make list of achievements and link them.
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox
-** Responsibility: Katharina
-** Proofreading: Elsa
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox
-** Responsibility: Moritz
-** Proofreading: George
-** Status:
-** ToDo:
-** Suggestions:
-*** George: make it shorter.
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Design
-** Responsibility: George
-** Proofreading: Luzi
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Implementation
-** Responsibility: Moritz
-** Proofreading: Katharina
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Technical_Standard
-** Responsibility: Sonja
-** Proofreading: Katharina
-** Status:
-** ToDo:
-** Suggestions:
-=== Team ===
-* https://2010.igem.org/Team:ETHZ_Basel/Team
-** Responsibility: Simona
-** Proofreading: George
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Team/Photos
-** Responsibility: George
-** Proofreading: Simona
-** Status:
-** ToDo:
-** Suggestions:
-* https://2010.igem.org/Team:ETHZ_Basel/Team/Acknowledgements
-** Responsibility: Thanuja
-** Proofreading: George
-** Status:
-** ToDo:
-** Suggestions:
-== Suggestions ==
-* https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Elsa'''
-first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
-<br>second paragraph: quite unclear, if possible, add more details & explain more
-<br>add a few sentences (and link them) regarding ARL & Safety
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
-&mu;m (?) high flow channel; remove question mark
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
-in second part of the page, 'cells with highest score'; define the score
-<br>clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
-Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.
-* https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
-added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
-spacing, subheadings & some bullet points); suggesting more images for the user experience part
-* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
-Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
-* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria
-check with biology to keep it updated (check list)
-* https://2010.igem.org/Team:ETHZ_Basel/Team
-Add link to Biozentrum Unibas.
-'''Christoph will do this by Sunday'''
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading '''Simona DONE'''
-Christoph:
-* first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
-* too many "in order to"
-* mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
-* Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!
-* Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined#Light_switch_-_Chemotaxis : interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
-* "To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading '''Simona DONE'''
-C: give an idea about the complexity, e.g. high number of proteins and interactions;
-why did we use only Spiro and Mello?;
-models: text first as it explains the plots;
-please gibe a clearer description of the plots, for an external person it's almost not understandable
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
-* make clear we did this completely on our own, not implemented but created!; '''Great section!!!''' ''''THANKS!!!'''
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined C: see above
-* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design C: OK

Team:ETHZ Basel/Internal

From 2010.igem.org

Latest revision as of 11:22, 25 December 2010