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| - | {{ETHZ_Basel10}}
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| - | {{ETHZ_Basel10_Empty}}
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| - | = Internal =
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| - | This section will be removed before wiki-freeze!
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| - |
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| - | = DO NOT EDIT NOW!!! =
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| - |
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| - | == General remarks ==
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| - | * '''Protein names''': normally written
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| - | * '''gene names''': italic
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| - | * '''Directed movement''' NOT running, please correct!
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| - | * '''chemotaxis''' pathway NOT Chemotaxis nor chemotactic
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| - | * '''E. lemming''' with space
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| - | ** E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified ''E. coli''
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| - | * '''far-red light''', not far red light, please correct!
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| - | * '''internal links''' - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
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| - | * ''in silico'' & ''in vivo'', not in-silico & in-vivo
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| - |
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| - | == [[Team:ETHZ_Basel/Internal/TeaserAnimations|Teaser & Animations]] ==
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| - |
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| - | == Responsibilities, Tasks & Suggestions ==
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| - | === Introduction ===
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| - | * https://2010.igem.org/Team:ETHZ_Basel
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Media
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | === Biology & Wet Laboratory ===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Archeal_Light_Receptor
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | === Mathematical Modeling ===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | === Information Processing ===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | === Achievements ===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Design
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Implementation
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Technical_Standard
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - |
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| - | === Team ===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team/Photos
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| - | ** Responsibility:
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| - | ** Proofreading:
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| - | ** Status:
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| - | ** ToDo:
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| - | ** Suggestions:
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team/Acknowledgements
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| - | ** Responsibility:
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| - | ** Status:
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| - | ** Suggestions:
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| - | == Suggestions ==
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Elsa'''
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| - | first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
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| - | <br>second paragraph: quite unclear, if possible, add more details & explain more
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| - | <br>add a few sentences (and link them) regarding ARL & Safety
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
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| - | 50 μm (?) high flow channel; remove question mark
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
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| - | in second part of the page, 'cells with highest score'; define the score
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| - | <br>clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
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| - | added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
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| - | spacing, subheadings & some bullet points); suggesting more images for the user experience part
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
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| - | Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria
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| - | check with biology to keep it updated (check list)
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team
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| - | Add link to Biozentrum Unibas.
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| - | '''Christoph will do this by Sunday'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading '''Simona DONE'''
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| - | Christoph:
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| - | * first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
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| - | * too many "in order to"
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| - | * mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
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| - |
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| - | * Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!
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| - | * Combined mathematical models: shouldn't light-switch-chemo-movement be the complete?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined#Light_switch_-_Chemotaxis : interfaces had to be defined, show that the individual models are without restrictons combinable by user wish, number of combinations
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | * "To model the relocation, we decided to adapt a model recently published by Sorokina et al [1]. As a first step we reimplemented the model as published in the paper." make one good sentence
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading '''Simona DONE'''
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| - | C: give an idea about the complexity, e.g. high number of proteins and interactions;
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| - | why did we use only Spiro and Mello?;
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| - | models: text first as it explains the plots;
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| - | please gibe a clearer description of the plots, for an external person it's almost not understandable
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
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| - | * make clear we did this completely on our own, not implemented but created!; '''Great section!!!''' ''''THANKS!!!'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined C: see above
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design C: OK
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"
