Team:Cambridge/Bioluminescence/Vibrio Modelling

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Latest revision as of 18:02, 27 October 2010

Project Vibrio: Modelling

We constructed a mathematical model of the Vibrio lux system. Unfortunately we were not able to characterise the individual genes, luxC, luxD, luxE, luxA and luxB, well enough to gain the kinetic data needed to model this system. Therefore we do not have as detailed a model as we did for the firefly system Nevertheless here is a diagrammatic representation of our model, generated from SBML using [http://sbw.kgi.edu/Layout/Default.aspx the SBW layout tool].

The literature

[http://www.ncbi.nlm.nih.gov/pubmed/19081933 Welham and Stekel (2009)] developed a mathematical model of the Xenorhabdus luminescens system. The organisation and function of the lux genes in this organism is very comparible to those of V. fischeri.

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-{{:Team:Cambridge/Templates/headerbar|colour=#386abc|title=Project Vibrio: Introduction}}
+{{:Team:Cambridge/Templates/headerbar|colour=#386abc|title=Project Vibrio: Modelling}}
-{{:Team:Cambridge/Templates/RightImage|image=Cambridge-Vibrio-model.png|caption=A visual representation of our model}}
+We constructed a '''mathematical model''' of the Vibrio lux system.  Unfortunately we were not able to characterise the individual genes, luxC, luxD, luxE, luxA and luxB, well enough to gain the kinetic data needed to model this system. Therefore we do not have as detailed a model as we did for the [https://2010.igem.org/Team:Cambridge/Bioluminescence/Firefly_Modelling firefly system] Nevertheless here is a diagrammatic representation of our model, generated from SBML using [http://sbw.kgi.edu/Layout/Default.aspx the SBW layout tool].
-'''Project Vibrio''' was designed to create BioBricks from genes involved in bacterial bioluminescence. These so called lux genes are clustered in lux operons and encode enzymes required for the catalysis of light-generating chemical reactions.
-==Natural bioluminescent bacteria==
+[[Image:Cambridge-Vibrio-model.png |700px|]]
-Bioluminescence is a trait found in a number of marine bacteria.  Some strains use their ability to emit light to form symbiotic relationships.  A number of deep sea fish and squids have specialised <em>light organs</em> which harbour populations of bacteria that help their hosts by emitting light.  One such example is the partnership between the Hawaiian Bobtail squid <em>(Euprymna scolopes)</em> and the bacterium <em>Vibrio fischeri</em>. At night squid hunt high in the water column, attacking their prey from above.  Vibrio Fischeri is usually found in symbiosis with the Hawaiian Bobtail Squid. The squid uses the light produced by its symbionts to hide the shadow it casts when hunting in top waters in clear moonlit nights. An elaborate light sensing and shutter system adjusts the light output to the light that falls on the squid's back. Other bioluminescent bacterial species can differ markedly in their lifestyles. Vibrio Harveyi is a free living marine bacterium, while Xenorhabdus luminescens is a symbiont of terrestrial nematodes.
+==The literature==
+[http://www.ncbi.nlm.nih.gov/pubmed/19081933 Welham and Stekel (2009)] developed a mathematical model of the ''Xenorhabdus luminescens'' system.  The organisation and function of the lux genes in this organism is very comparible to those of ''V. fischeri''.
-==Our work==
-To complement 'Project Firefly', we wanted to use lux operons for the following two purposes:
-* Emission of blue light to complete our spectrum of emission wavelengths.
-* Substrate production within E. coli, avoiding the need for addition of external substrates, such as luciferin.
-Bacterial lux operons encode five enzymes involved in the light-generating pathway.
-*<i>luxA</i> and <i>luxB</i> form the luciferase of the system, which causes the emission of light when acting on the substrate tetradecanal.
-*<i>luxC</i>, <i>luxD</i> and <i>luxE</i> are involved in the biosynthesis of tetradecanal from readily available substrates.
-In nature, the lux genes appear to be repressed by the [https://2010.igem.org/Team:Cambridge/Bioluminescence/Background nucleoid protein, H-NS], and occur under [https://2010.igem.org/Team:Cambridge/Bioluminescence/Background quorum sensing control].
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