Team:Korea U Seoul/Brain-storming

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Latest revision as of 12:50, 16 October 2010

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Let's go people!!!!!
SOS repair system & your ideas!!

I found Aberdeen_Scotland team in 2009 igem can be a good guide to our curcuit.
This team used lacI forms complex with IPTG.
Cl and Cl operator can be used as a switch.

--Sadesabin 06:04, 14 August 2010 (UTC)

https://2009.igem.org/Team:Aberdeen_Scotland/WetLab/lacilatch
https://2009.igem.org/Team:Aberdeen_Scotland/Project#Introduction
이거슨 Averdeen 팀의 프로젝트 개요!

--Needks 07:10, 14 August 2010 (UTC)

IPTG, LacI and CI are related
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC139174/pdf/pq2602016516.pdf

This file also note that.

--Sadesabin 06:32, 16 August 2010 (UTC)

TetR structure

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/bin/zmr0020520860002.jpg

tetR-controlled activation regulation

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/

When TetR binds to tetR operator, it makes the promoter attached to operator work
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/bin/zmr0020520860003.jpg
Binding of TetR to its operator site. A) tetR operator and contact regions. The tetR operator is a palindromic sequence. Horizontal bars show nucleotides contacted by each monomer of the TetR dimer. B) Interaction of TetR residues with specific nucleotides (arrows) and phosphate backbone (blue lines) in the operator region. The amino acids involved in DNA binding extend from residues 27 to 48. Contacts established with the operator were confirmed by footprint assays, by analysis of TetR mutants, and by crystallographic studies (29, 30, 159, 266, 366). C) Representation of each homodimer bound to the tet operator in a double-helix representation. (Adapted from Orth et al. [288] with permission of the publisher.)

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/bin/zmr002052086008a.jpg

--Needks 14:35, 4 September 2010 (UTC)

This is from cyworld club

회로를 이용해서 전사 레귤레이션하는 것들을 모아놓은거를 차자뜸!!!!><

위키 브레인스토밍에 올려놓음!

그리고 오늘일자로 tetR에 대한 내용도 올려놓음!!!

글구 생각해본게 몇개 있는데

이거 빠른시일내 우리 모두 생각해봐야할 거같아...

1. 중금속탐지 회로 완성

Cd Promoter/Cd gene----Zn Promoter/Zn gene----또뭐더라promoter/gene---kill promoter/kill gene-----

요러케 하는데 각 프로모터찾기...

kill promoter 같은 경우는 인듀서를 자연상태에 방치되었을때 가능한걸로...

뭐 UV라던가...? 라는 생각이 들어씀....

2. Toggle 스위치말야ㅑ....

그 우리가 논문에서 찾은 쌍방유전자 쓰던가...

아님 세개 유기적으로 돌아가는거 쓰던가 해야하는데...

일단 샘플이라도 만들어놓고~

1)일단 이 샘플로 가면 켜고 끄는것까지는 가능하나 그다음 못켠다

라고 쓰던가....

2)전기적으로 아세트알데히드같은것도 주입하니깐 그때 필요한 상황에 따라서 IPTG나 dox주입하게끔 컴퓨테이션 한다... 라던가....

3)아니면 우리가 tag를 붙여서 해결할 수 있는 방법이 있을 수도 있을 수도 있을거 같으니깐말야...

tag에 대해서 조금 더 알아보쟈규...

공부해보자!! --Needks 14:43, 4 September 2010 (UTC)

@@ Line 1: / Line 1: @@
+{| style="font-family:Georgia; color:#1b2c8a;background-color:;" cellpadding="5" cellspacing="0" border="0" bordercolor="white" width="62%" align="center"
+!align="center"|[[Team:Korea_U_Seoul|Home]]
+!align="center"|[[Team:Korea_U_Seoul/Team|Team]]
+!align="center"|[https://igem.org/Team.cgi?year=2010&team_name=Korea_U_Seoul Official Team Profile]
+!align="center"|[[Team:Korea_U_Seoul/Project|Project]]
+!align="center"|[[Team:Korea_U_Seoul/Brain-storming|Brain-storming]]
+!align="center"|[[Team:Korea_U_Seoul/Parts|Parts Submitted to the Registry]]
+!align="center"|[[Team:Korea_U_Seoul/Modeling|Modeling]]
+!align="center"|[[Team:Korea_U_Seoul/Notebook|Notebook]]
+!align="center"|[[Team:Korea_U_Seoul/Safety|Safety]]
+|}
+{| align=left cellpadding=15
+|__TOC__
+|}
+----
 Let's go people!!!!!<br>
 SOS repair system & your ideas!!
@@ Line 29: / Line 46: @@
 --[[User:Sadesabin|Sadesabin]] 06:32, 16 August 2010 (UTC)
+----
+*TetR structure
+http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/bin/zmr0020520860002.jpg
+tetR-controlled activation regulation
+*http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/
+When TetR binds to tetR operator, it makes the promoter attached to operator work<br>
+http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/bin/zmr0020520860003.jpg<br>
+Binding of TetR to its operator site. A) tetR operator and contact regions. The tetR operator is a palindromic sequence. Horizontal bars show nucleotides contacted by each monomer of the TetR dimer. B) Interaction of TetR residues with specific nucleotides (arrows) and phosphate backbone (blue lines) in the operator region. The amino acids involved in DNA binding extend from residues 27 to 48. Contacts established with the operator were confirmed by footprint assays, by analysis of TetR mutants, and by crystallographic studies (29, 30, 159, 266, 366). C) Representation of each homodimer bound to the tet operator in a double-helix representation. (Adapted from Orth et al. [288] with permission of the publisher.)
+http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1197418/bin/zmr002052086008a.jpg
+--[[User:Needks|Needks]] 14:35, 4 September 2010 (UTC)
+----
+This is from cyworld club
+회로를 이용해서 전사 레귤레이션하는 것들을 모아놓은거를 차자뜸!!!!><
+위키 브레인스토밍에 올려놓음!
+그리고 오늘일자로 tetR에 대한 내용도 올려놓음!!!
+글구 생각해본게 몇개 있는데
+이거 빠른시일내 우리 모두 생각해봐야할 거같아...
+. 중금속탐지 회로 완성
+----Cd Promoter/Cd gene----Zn Promoter/Zn gene----또뭐더라promoter/gene---kill promoter/kill gene-----
+요러케 하는데 각 프로모터찾기...
+kill promoter 같은 경우는 인듀서를 자연상태에 방치되었을때 가능한걸로...
+뭐 UV라던가...? 라는 생각이 들어씀....
+. Toggle 스위치말야ㅑ....
+그 우리가 논문에서 찾은 쌍방유전자 쓰던가...
+아님 세개 유기적으로 돌아가는거 쓰던가 해야하는데...
+일단 샘플이라도 만들어놓고~
+)일단 이 샘플로 가면 켜고 끄는것까지는 가능하나 그다음 못켠다
+라고 쓰던가....
+)전기적으로 아세트알데히드같은것도 주입하니깐 그때 필요한 상황에 따라서 IPTG나 dox주입하게끔 컴퓨테이션 한다... 라던가....
+)아니면 우리가 tag를 붙여서 해결할 수 있는 방법이 있을 수도 있을 수도 있을거 같으니깐말야...
+tag에 대해서 조금 더 알아보쟈규...
+공부해보자!!
+--[[User:Needks|Needks]] 14:43, 4 September 2010 (UTC)
 ----