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__NOTOC__{{UT-Tokyo_CSS3}}{{UT-Tokyo_CSS_p}}{{UT-Tokyo_Head}} = '''Sudoku''' = [https://2010.igem.org/Team:UT-Tokyo/Sudoku_abstract Introduction] [https://2010.igem.org/Team:UT-Tokyo/Sudoku_construct System] [https://2010.igem.org/Team:UT-Tokyo/Sudoku_lab_note Lab note] [https://2010.igem.org/Team:UT-Tokyo/Sudoku_result Result] Reference =='''Reference'''== ==='''cre recombinase'''=== 1.Cre recombinase‐mediated inversion using lox66 and lox71: method to introduce conditional point mutations into the CREB‐binding protein<br /> Zuwen Zhang and Beat Lutz, Nucleic Acids Research, 30, e90 (2002) 2.Role of nucleotide sequences of loxP spacer region in Cre-mediated recombination.<br /> Lee G and Saito I, Gene, 216, 55-65 3.In vitro characterization of the site-speciWc recombination system based on actinophage TG1 integrase<br /> Kentaro Morita, Tomoyuki Yamamoto, Naoki Fusada, Mamoru Komatsu, Haruo Ikeda, Nobutaka Hirano and Hideo Takahashi, Mol Genet Genomics, 282, 607-16 ==='''as RNA'''=== 1.Artificial antisense RNAs silence lacZ in E. coli by decreasing target mRNA concentration<br /> Stefan Alessandra, Tonelli Alessandro, Schwarz Flavio and Hochkoeppler Alejandro, BMB reports, 568-74 (2008) 2.Kill the messenger: bacterial antisense RNA promotes mRNA decay<br /> E Gerhart H Wagner, nature structural & molecular biology, 16, 804-6 (2009) 3.Distance between RBS and AUG plays an important role in overexpression of recombinant proteins<br /> Sunil K. Berwal, R.K. Sreejith and Jayanta K. Pal, Analytical Biochemistry, 405, 275-7 (2010) 4.Antisense RNA Control of Plasmid R1 Replication<br /> Charlotta Malmgren, E. Gerhart H. Wagner, Chantal Ehresmann, Bernard Ehresmann and Pascale Romby, The Journal of Biologycal Chemistry, 272, 12508-12 (1997) 5.Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli<br /> Nobutaka Nakashima, Tomohiro Tamura and Liam Good, Nucleic Acids Research, 34, e138 (2006) 6.The Influence of Antisense Oligonucleotide-induced RNA Structure on Escherichia coli RNase H1 Activity<br /> Walt F. Lima, Venkatraman Mohan and Stanley T. Crooke, The Journal of Biological Chemistry, 272, 18191-8 (2010) ==='''MS2 phage'''=== 1.Studies on Sex Pili: Mutants of the Sex Factor F in Escherichia coli Defective in Bacteriophage-Adsorbing Function of F Pili<br /> Munemitsu Tomoeda, Akemi Shuta and Manabu Inuzuka, Journal of Bacteriology, 112, 1358-63 (1972) 2.Crystal structure of an RNA bacteriophage coat protein-operator complex<br /> Karin Valegard, James B. Murray, Peter G. Stockley, Nicola J. Stonehouse and Lars Liljas, Nature, 371, 626 (1994) 3.Ribonucleoprotein Complexes of R17 Coat Protein and a Translational Operator Analog<br /> Dorothy Beckett and Olke C. Uhlenbeck, Journal of Molecular Biology, 204, 927-38 (1988) 4.A unique mechanism regulating gene expression: Translational inhibition by a complementary RNA transcript (micRNA)<br /> Takeshi Mizuno, Mei-Yin Chou and Masayori Inoue, Proc. Nail. Acad. Sci. USA, 81, 1966-70 (1984) 5.Lysis gene expression of RNA phage MS2 depends on a frameshift during translation of the overlapping coat protein gene<br /> R.A.Kastelein, E.Remaut, W.Fiers and J.van Duin, Nature, 295, 35-41 6.微生物学講義録 前国立感染症研究所長 吉倉　廣 著 第14章 　RNAファージ<br /> http://jsv.umin.jp/microbiology/main_014.htm ==='''T7 RNA polymerase'''=== 1.Characterization of two types of termination signal for bacteriophage T7 RNA polymerase.<br /> Macdonald LE, Durbin RK, Dunn JJ and McAllister WT, Journal of molecular biology, 238, 145-58 (1994) ==='''To write introduction'''=== 1.Purnick, P.E., and Weiss, R. The second wave of synthetic biology: from modules to systems. Nat. Rev. Mol. Cell. Biol. 10, 410-22.(2009). 2.Gardner, T. S., Cantor, C. R. & Collins, J. J. Construction of a genetic toggle switch in Escherichia coli. Nature 403, 339-42 (2000). 3.Anderson, J. C., Clarke, E. J., Arkin, A. P. & Voigt, C. A. Environmentally controlled invasion of cancer cells by engineered bacteria. J. Mol. Biol. 355, 619-27 (2006). 4.Anderson, J.C., Voigt, C.A. & Arkin, A.P. Environmental signal integration by a modular AND gate. Mol. Syst. Biol. 3, 133 (2007). 5.Win, M. N. & Smolke, C. D. Higher-order cellular information processing with synthetic RNA devices. Science 322, 456-60 (2008). 6.Ham, T. S., Lee, S. K., Keasling, J. D. & Arkin, A. P. Design and construction of a double inversion recombination switch for heritable sequential genetic memory. PLoS ONE 3, e2815 (2008). 7.Friedland, A. et al. Synthetic gene networks that count. Science 324, 1199?1202 (2009). {{UT-Tokyo_Foot}}

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