BLASTN 2.2.24+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and
Webb Miller (2000), "A greedy algorithm for aligning DNA
sequences", J Comput Biol 2000; 7(1-2):203-14.


RID: A6B940UX111


Query=   pSB1C3.nLMWP.SOD.hi1_premix -- 14..1020 of sequence
Length=1007


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

lcl|39763                                                           329    4e-94

ALIGNMENTS
>lcl|39763 
Length=857

 Score =  329 bits (178),  Expect = 4e-94
 Identities = 183/185 (99%), Gaps = 2/185 (1%)
 Strand=Plus/Plus

Query  138  ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA  195
            |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct  673  ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAAACGGGCAAGGTGTCACCA  732

Query  196  CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  733  CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC  792

Query  256  ACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCG  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  793  ACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCG  852

Query  316  GTAAT  320
            |||||
Sbjct  853  GTAAT  857


 Score =  259 bits (140),  Expect = 6e-73
 Identities = 140/140 (100%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  3    AAAATAGGCGTATCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGG  62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49   AAAATAGGCGTATCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGG  108

Query  63   ATGATTTCTGGAATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGT  122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  109  ATGATTTCTGGAATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGT  168

Query  123  GGACGTCGCCGTCGCACCGG  142
            ||||||||||||||||||||
Sbjct  169  GGACGTCGCCGTCGCACCGG  188