Team:ZJU-China/Software

From 2010.igem.org

(Difference between revisions)
 
(9 intermediate revisions not shown)
Line 3: Line 3:
<div id="main_content">
<div id="main_content">
 +
<img src="https://static.igem.org/mediawiki/2010/6/6b/Bach_project_zju2.jpg"/>
     <h1><b>Bach: Gene Composer</b></h1>
     <h1><b>Bach: Gene Composer</b></h1>
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Bach is a gene composer software that optimizes coding sequences and calculates corresponding RiPS to illustrate their translation rates. In sequence optimization, Bach incorporates 4 distinct approaches from which users can freely choose: SYNONYMOUS SUBSTITUTION, SLOW, FAST and MATCH. In the last section of GET RIPS, users are provided with a quantitative view of the translational behavior of the input coding sequence and the four sequences produced by the four methods as well. </p>   
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Bach is a gene composer software that optimizes coding sequences and calculates corresponding RiPS to illustrate their translation rates. In sequence optimization, Bach incorporates 4 distinct approaches from which users can freely choose: SYNONYMOUS SUBSTITUTION, SLOW, FAST and MATCH. In the last section of GET RIPS, users are provided with a quantitative view of the translational behavior of the input coding sequence and the four sequences produced by the four methods as well. </p>   
     <br />  
     <br />  
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Run Bach for the following research needs:</p>
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Run Bach for the following research needs:</p>
-
     <li>Heterogeneous protein expression</li>
+
     <li>heterologous protein expression</li>
     <li>Evaluation of translation rates and behavior</li>
     <li>Evaluation of translation rates and behavior</li>
     <li>Design of more predictable and robust genetic circuits</li>
     <li>Design of more predictable and robust genetic circuits</li>
Line 19: Line 20:
      
      
     <h1>System Requirement</h1>
     <h1>System Requirement</h1>
-
     <li>Operating System:</li>
+
     <li>Operating System:</li>
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Recommended OS: Windows 7 32-bit Operating System<br />
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Recommended OS: Windows 7 32-bit Operating System<br />
     &nbsp;&nbsp;&nbsp;&nbsp;Minimum OS: Windows XP 32-bit Operating System</p>
     &nbsp;&nbsp;&nbsp;&nbsp;Minimum OS: Windows XP 32-bit Operating System</p>
Line 31: Line 32:
     <br />
     <br />
      
      
-
     <p>Bach for DOWNLOAD:</p>
+
     <b><p>Bach for DOWNLOAD (include User Guide Manual): <a href="http://sourceforge.net/projects/igemzjuchina/files/Bach_binary_file.rar/download" target=_blank>Bach Binary Executable File</a></p>
-
     <p>Manual for DOWNLOAD:</p>
+
     <p>Manual for DOWNLOAD: <a href="http://sourceforge.net/projects/igemzjuchina/files/Users_Guide_for_Bach.pdf/download" target=_blank>User Guide Manual</a></p>
 +
    <p>Project Source Code for DOWNLOAD: <a href="http://sourceforge.net/projects/igemzjuchina/files/Bach_source.rar/download" target=_blank>Project Source Code</a>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
      
      
-
     <p>For more information about Bach on its algorithm and using, please refer to the manual.</p>
+
     <p>&nbsp;&nbsp;&nbsp;&nbsp;For more information about Bach on its algorithm and using, please refer to the manual.</p>
     <br />
     <br />
      
      
     <h1>Copyright</h1>
     <h1>Copyright</h1>
-
     <p>Bach is Copyrignt © ZJU-CHINA iGEM 2010. All rights reserved.</p>
+
     <p>&nbsp;&nbsp;&nbsp;&nbsp;Bach is Copyrignt © ZJU-CHINA iGEM 2010. All rights reserved.</p>
-
     <p>For further queries related to Bach program, please contact us through the email of wendyhu001@gmail.com. Any reports of failure or suggestions on Bach are welcome.</p>
+
     <p>&nbsp;&nbsp;&nbsp;&nbsp;For further queries related to Bach program, please contact us through the email of wendyhu001@gmail.com. Any reports of failure or suggestions on Bach are welcome.</p>
<br />
<br />

Latest revision as of 10:17, 7 December 2010

Bach: Gene Composer

    Bach is a gene composer software that optimizes coding sequences and calculates corresponding RiPS to illustrate their translation rates. In sequence optimization, Bach incorporates 4 distinct approaches from which users can freely choose: SYNONYMOUS SUBSTITUTION, SLOW, FAST and MATCH. In the last section of GET RIPS, users are provided with a quantitative view of the translational behavior of the input coding sequence and the four sequences produced by the four methods as well.


    Run Bach for the following research needs:

  • heterologous protein expression
  • Evaluation of translation rates and behavior
  • Design of more predictable and robust genetic circuits

  •     Run Bach for the following benefits:

  • Diverse optimization approaches of choice
  • Quantitative Analysis of translational behavior
  • Free and easy to use

  • System Requirement

  • Operating System:
  •     Recommended OS: Windows 7 32-bit Operating System
        Minimum OS: Windows XP 32-bit Operating System

  • Hardware Configuration:
  •     No strict limits.

        Recommended configuration:

            RAM ≥ 1GB
            Hard Disk ≥ 100GB
            CPU ≥ 1.66GHZ


    Bach for DOWNLOAD (include User Guide Manual): Bach Binary Executable File

    Manual for DOWNLOAD: User Guide Manual

    Project Source Code for DOWNLOAD: Project Source Code        

        For more information about Bach on its algorithm and using, please refer to the manual.


    Copyright

        Bach is Copyrignt © ZJU-CHINA iGEM 2010. All rights reserved.

        For further queries related to Bach program, please contact us through the email of wendyhu001@gmail.com. Any reports of failure or suggestions on Bach are welcome.