Team:USTC Software/notebook

From 2010.igem.org

Revision as of 07:05, 29 July 2010 by Liaochen (Talk | contribs)

Goals:

(1) our software works only for biobricks transported in E.coli cells at present, may be it works in other compartments, such as B.subtilis, or Yeast in the future.

Features:

(1) for each basic biobrick, users could choose its forward or backward element. A backward element has the same sequence on different strands with its forward element when reading from 5' to 3'.


技术贴:

http://www.oracle.com/technology/global/cn/products/berkeley-db/xml/index.html 下载BDB (Berkerly DB XML 2.5),可以很好支持XML文件的查找与插入,删除,索引操作,既支持命令行也支持应用程序的调用。

在BDB中,所有的文件存在container中,这些container实际上是XML文档和其他信息的集合,它即可作为整个文档(一个单元)存储,又可作为许多结点存储--这时整个文档分解为一个一个小的结点。

这个软件的安装比较诡异,在install/bin/里面有dbxml的命令,直接输入(我是运行完外面的build.sh后才运行的,安装时间暴长...)。这时出现prompt。