Team:USTC Software/notebook

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Revision as of 07:05, 29 July 2010

Goals:

(1) our software works only for biobricks transported in E.coli cells at present, may be it works in other compartments, such as B.subtilis, or Yeast in the future.

Features:

(1) for each basic biobrick, users could choose its forward or backward element. A backward element has the same sequence on different strands with its forward element when reading from 5' to 3'.

技术贴：

http://www.oracle.com/technology/global/cn/products/berkeley-db/xml/index.html 下载BDB （Berkerly DB XML 2.5)，可以很好支持XML文件的查找与插入，删除，索引操作，既支持命令行也支持应用程序的调用。

在BDB中，所有的文件存在container中，这些container实际上是XML文档和其他信息的集合，它即可作为整个文档（一个单元）存储，又可作为许多结点存储－－这时整个文档分解为一个一个小的结点。

这个软件的安装比较诡异，在install/bin/里面有dbxml的命令，直接输入（我是运行完外面的build.sh后才运行的，安装时间暴长...)。这时出现prompt。